GS_00BUP6Z.1

Display Name: USA/GS_00BUP6Z.1/2025-02-26
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV246589.1.seg4
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:41 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Clade

Clade ha
V1A.3a.2

Alignment states and QC metrics seg4

Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
57
Total unknown nucs seg4
0

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-02-26
Isolate name
GKISBBBE55338

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg4
PV246589.1
NCBI release date
2025-03-07

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • seg4:C252A
  • seg4:G267A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:A438G
  • seg4:C441T
  • seg4:T444C
  • seg4:C447T
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
    • Deletions
    seg4:562-570
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154T
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:A202V
  • HA1:K203R
  • HA1:R279K

    • HA2

  • HA2:R151K
    • Deletions
    HA1:162-164
    Insertions
    None