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Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
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Influenza A
Influenza B
RSV-A
RSV B
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GS_00BUP27.1
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Display Name: USA/GS_00BUP27.1/2025-02-24
Rothstein,
A. P.; Collins,
S.; Muir,
G.; Qiu,
X.; Simas,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Philipson,
C. W.; Plocik,
A. M.; Simen,
B.
Submission details
Submission ID
PV246571.1.seg4/PV246572.1.seg6/PV246573.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:41 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade ha
V1A.3a.2
Clade na
B.7
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
52
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1529
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
128
Total SNPs seg6
34
Total unknown nucs seg6
0
Alignment states and QC metrics seg8
Completeness seg8
99.62%
Length seg8
1083
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
21
Total SNPs seg8
21
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-02-24
Isolate name
GKISBBBE37255
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg4
PV246571.1
INSDC accession seg6
PV246572.1
INSDC accession seg8
PV246573.1
NCBI release date
2025-03-07
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
C
252
A
seg4:
G
267
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
T
345
C
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
G
457
A
seg4:
G
460
A
seg4:
A
463
G
seg4:
A
484
G
seg4:
C
509
T
Show more
seg6
seg6:
T
9
C
seg6:
T
15
C
seg6:
C
125
A
seg6:
T
155
C
seg6:
T
212
C
seg6:
G
279
A
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
C
429
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
G
610
A
seg6:
A
660
C
seg6:
T
714
A
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
Show more
seg8
seg8:
G
6
A
seg8:
G
26
A
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
391
C
seg8:
C
419
T
seg8:
G
478
A
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
A
646
G
seg8:
G
661
A
seg8:
C
666
T
seg8:
T
775
C
seg8:
G
818
A
Show more
Deletions
seg4:562-570
Insertions
ins_seg8:1066:TAAAAATCCTCTTGTTACTAC, ins_seg6:0:ATCTTCTCGAAACTGAAGCAAATAGGCCAGAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
NA
NA:
P
42
Q
NA:
L
52
S
NA:
V
71
A
NA:
I
120
V
NA:
V
204
I
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
S
345
N
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
V
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
NS1:
A
212
V
NS1:
V
263
M
Deletions
HA1:162-164
Insertions
None
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