GS_00BUNK7.1

Display Name: USA/GS_00BUNK7.1/2025-01-28
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV246456.1.seg1/PV246457.1.seg2/PV246455.1.seg3/PV246452.1.seg4/PV246454.1.seg6/PV246453.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:10 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Clade

Clade ha
V1A.3a.2
Clade na
B.7.3

Alignment states and QC metrics seg3

Completeness seg3
100.00%
Length seg3
2277
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
32
Total SNPs seg3
52
Total unknown nucs seg3
0

Alignment states and QC metrics seg4

Completeness seg4
98.57%
Length seg4
1852
Total ambiguous nucs seg4
0
Total deleted nucs seg4
6
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
53
Total unknown nucs seg4
0

Alignment states and QC metrics seg6

Completeness seg6
100.00%
Length seg6
1539
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
138
Total SNPs seg6
38
Total unknown nucs seg6
0

Alignment states and QC metrics seg7

Completeness seg7
100.00%
Length seg7
1154
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
7
Total SNPs seg7
19
Total unknown nucs seg7
0

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-01-28
Isolate name
GKISBBBE72437

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV246456.1
INSDC accession seg2
PV246457.1
INSDC accession seg3
PV246455.1
INSDC accession seg4
PV246452.1
INSDC accession seg6
PV246454.1
INSDC accession seg7
PV246453.1
NCBI release date
2025-03-07

Alignment states and QC metrics seg1

Length seg1
2343

Alignment states and QC metrics seg2

Length seg2
2381

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • seg3:T111C
  • seg3:C117T
  • seg3:T327C
  • seg3:T339C
  • seg3:G414A
  • seg3:T423C
  • seg3:G549A
  • seg3:A618G
  • seg3:T654C
  • seg3:G683A
  • seg3:C813T
  • seg3:G819A
  • seg3:G867A
  • seg3:C897T
  • seg3:G936A
  • seg3:A987G
  • seg3:C996T
  • seg3:C1006T

    • seg4

  • seg4:T195C
  • seg4:C252A
  • seg4:C270T
  • seg4:A291T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:T402C
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:G457A
  • seg4:A461G
  • seg4:A463G
  • seg4:A484G

    • seg6

  • seg6:T9C
  • seg6:A108G
  • seg6:C125A
  • seg6:C140T
  • seg6:T212C
  • seg6:A358G
  • seg6:T363C
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:A660C
  • seg6:T714A
  • seg6:C849T
  • seg6:T879C
  • seg6:T885G
  • seg6:A894C
  • seg6:T903C

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:T191C
  • seg7:G316A
  • seg7:A419G
  • seg7:C455T
  • seg7:G482A
  • seg7:G500T
  • seg7:G521A
  • seg7:G536A
  • seg7:A566G
  • seg7:C656T
  • seg7:G668A
  • seg7:T772C
  • seg7:A897C
  • seg7:A919G
  • seg7:A967G
    • Deletions
    seg4:568-573
    Insertions
    ins_seg7:0:TCTTA, ins_seg7:1147:AA, ins_seg6:0:AGAAGCGGAGCATCTTCTCAAAACTGAGGCAAATAGGCCAAAAATGAACA, ins_seg6:1401:TGGGAGAATGGTTAAGTTTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTGCTAAACTTAATTGTTTCTGAAAAAT, ins_seg3:2241:AGAAAC, ins_seg3:2245:ATCAAAAAT, ins_seg3:0:GCGTTTGATTTATCATA

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    BM2

  • BM2:N50T

    • HA1

  • HA1:K71N
  • HA1:I117V
  • HA1:A127T
  • HA1:E128G
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

    • HA2

  • HA2:L202M

    • M1

  • M1:T15I
  • M1:R105K

    • NA

  • NA:I36M
  • NA:P42Q
  • NA:A47V
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:M375K
  • NA:G378E
  • NA:D384G
  • NA:A395V
  • NA:V401I

    • PA

  • PA:S228N
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V
    • Deletions
    HA1:164, HA1:165
    Insertions
    None