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GS_00BUNJ9.1
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Display Name: USA/GS_00BUNJ9.1/2025-01-07
Rothstein,
A. P.; Collins,
S.; Muir,
G.; Qiu,
X.; Simas,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Philipson,
C. W.; Plocik,
A. M.; Simen,
B.
Submission details
Submission ID
PV246450.1.seg1/PV246451.1.seg2/PV246447.1.seg4/PV246448.1.seg7/PV246449.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:10 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade ha
V1A.3a.2
Alignment states and QC metrics seg4
Completeness seg4
98.62%
Length seg4
1850
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
54
Total unknown nucs seg4
0
Alignment states and QC metrics seg7
Completeness seg7
99.83%
Length seg7
1147
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
2
Total SNPs seg7
17
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.62%
Length seg8
1083
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
21
Total SNPs seg8
17
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-01-07
Isolate name
GKISBBBE66765
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg1
PV246450.1
INSDC accession seg2
PV246451.1
INSDC accession seg4
PV246447.1
INSDC accession seg7
PV246448.1
INSDC accession seg8
PV246449.1
NCBI release date
2025-03-07
Alignment states and QC metrics seg1
Length seg1
2355
Alignment states and QC metrics seg2
Length seg2
2367
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
T
195
C
seg4:
C
252
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
T
402
C
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
G
457
A
seg4:
A
461
G
seg4:
A
463
G
seg4:
A
484
G
seg4:
C
509
T
Show more
seg7
seg7:
G
8
A
seg7:
C
33
T
seg7:
C
46
T
seg7:
A
83
G
seg7:
T
125
A
seg7:
G
316
A
seg7:
G
371
T
seg7:
A
419
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
G
521
A
seg7:
G
536
A
seg7:
A
566
G
seg7:
C
656
T
seg7:
T
772
C
seg7:
A
919
G
seg7:
A
967
G
seg8
seg8:
G
26
A
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
391
C
seg8:
C
419
T
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
T
775
C
seg8:
C
882
T
seg8:
C
941
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
ins_seg8:1066:TAAAAATCCTCTTGTTACTAC, ins_seg7:1147:AA
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
G
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
V
177
I
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
S
277
N
HA1:
R
279
K
M1
M1:
T
15
I
M1:
R
105
K
NEP
NEP:
L
30
S
NEP:
S
93
P
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
Deletions
HA1:162-164
Insertions
None
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