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Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
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GS_00BUN0C.1
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Display Name: USA/GS_00BUN0C.1/2025-01-03
Paull,
J.; Messer,
K.; Adams,
G.; Nabatanzi,
D.; Dobbins,
S.; Tomkins-Tinch,
C.; Mboowa,
G.; Luebbert,
L.; Worby,
C.; Wewior,
N.; Samani,
P.; DeRuff,
K.; Blumenstiel,
B.; Moreno,
G.; Earl,
A.; Gnirke,
A.; MacInnis,
B.; Sabeti,
P.; Lemieux,
J.; Park,
D.
Submission details
Submission ID
PV242517.1.seg1/PV242518.1.seg2/PV242519.1.seg3/PV242520.1.seg4/PV242521.1.seg5/PV242522.1.seg6/PV242523.1.seg7/PV242524.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:10 UTC
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
Bioproject accession
PRJNA1052714
Biosample accession
SAMN47202817
INSDC accession seg1
PV242517.1
INSDC accession seg2
PV242518.1
INSDC accession seg3
PV242519.1
INSDC accession seg4
PV242520.1
INSDC accession seg5
PV242521.1
INSDC accession seg6
PV242522.1
INSDC accession seg7
PV242523.1
INSDC accession seg8
PV242524.1
NCBI release date
2025-03-07
SRA run accession
SRR32579544
Clade
Clade ha
V1A.3a.2
Clade na
B.7
Alignment states and QC metrics seg3
Completeness seg3
91.22%
Length seg3
2048
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
44
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
91.67%
Length seg4
1719
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
52
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
97.94%
Length seg5
1714
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
30
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
94.22%
Length seg6
1350
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
30
Total SNPs seg6
29
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
75.24%
Length seg7
863
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
11
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
78.89%
Length seg8
842
Total ambiguous nucs seg8
1
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
18
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2025-01-03
Isolate name
MA-Broad_MGH-23030
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Alignment states and QC metrics seg1
Length seg1
2279
Alignment states and QC metrics seg2
Length seg2
2135
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg3
seg3:
T
111
C
seg3:
C
117
T
seg3:
T
339
C
seg3:
G
414
A
seg3:
T
423
C
seg3:
A
513
G
seg3:
G
549
A
seg3:
A
618
G
seg3:
T
654
C
seg3:
A
771
G
seg3:
C
813
T
seg3:
C
820
T
seg3:
G
867
A
seg3:
C
897
T
seg3:
A
935
G
seg3:
G
936
A
seg3:
C
1006
T
seg3:
A
1054
G
Show more
seg4
seg4:
A
110
G
seg4:
C
252
A
seg4:
G
267
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
T
345
C
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
C
440
A
seg4:
C
441
T
seg4:
T
444
C
seg4:
G
457
A
seg4:
G
460
A
seg4:
A
463
G
Show more
seg5
seg5:
T
46
C
seg5:
C
178
T
seg5:
G
188
A
seg5:
C
193
A
seg5:
A
224
G
seg5:
A
235
G
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
G
412
A
seg5:
A
454
G
seg5:
C
523
T
seg5:
C
608
T
seg5:
A
634
G
seg5:
A
763
G
seg5:
C
841
T
Show more
seg6
seg6:
C
125
A
seg6:
T
155
C
seg6:
T
212
C
seg6:
G
279
A
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
C
429
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
G
610
A
seg6:
A
660
C
seg6:
T
714
A
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
seg6:
C
954
T
seg6:
C
987
T
Show more
seg7
seg7:
G
316
A
seg7:
A
419
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
G
521
A
seg7:
G
536
A
seg7:
A
566
G
seg7:
C
656
T
seg7:
C
802
T
seg7:
A
919
G
seg7:
A
967
G
seg8
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
A
365
G
seg8:
T
391
C
seg8:
C
419
T
seg8:
G
478
A
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
A
646
G
seg8:
G
661
A
seg8:
C
666
T
seg8:
T
775
C
seg8:
G
818
A
seg8:
C
882
T
Deletions
seg4:562-570
Insertions
ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCC
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
N
11
S
HA1:
I
117
V
HA1:
T
121
N
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
M1
M1:
R
105
K
NA
NA:
P
42
Q
NA:
L
52
S
NA:
V
71
A
NA:
I
120
V
NA:
V
204
I
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
V
NA:
V
401
I
NEP
NEP:
L
30
S
NP
NP:
A
54
T
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
S
112
G
NS1:
L
130
F
NS1:
H
201
Y
NS1:
A
212
V
NS1:
V
263
M
PA
PA:
K
312
R
PA:
T
352
A
PA:
S
530
T
PA:
F
709
I
PA:
N
714
S
Deletions
HA1:162-164
Insertions
None
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