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Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
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Influenza A
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RSV-A
RSV B
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GS_00BUMZE.1
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Display Name: USA/GS_00BUMZE.1/2025-01-02
Rothstein,
A. P.; Collins,
S.; Muir,
G.; Qiu,
X.; Simas,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Philipson,
C. W.; Plocik,
A. M.; Simen,
B.
Submission details
Submission ID
PV246425.1.seg2/PV246422.1.seg4/PV246424.1.seg5/PV246423.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:10 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade ha
V1A.3a.2
Clade na
B.7.3
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
54
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
100.00%
Length seg5
1815
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
65
Total SNPs seg5
30
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1528
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
127
Total SNPs seg6
33
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2025-01-02
Isolate name
GKISBBBE60510
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg2
PV246425.1
INSDC accession seg4
PV246422.1
INSDC accession seg5
PV246424.1
INSDC accession seg6
PV246423.1
NCBI release date
2025-03-07
Alignment states and QC metrics seg2
Length seg2
2367
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
T
195
C
seg4:
C
252
A
seg4:
C
265
T
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
T
402
C
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
G
457
A
seg4:
A
461
G
seg4:
A
463
G
seg4:
A
484
G
Show more
seg5
seg5:
C
3
T
seg5:
T
46
C
seg5:
A
55
G
seg5:
C
178
T
seg5:
A
224
G
seg5:
A
235
G
seg5:
C
271
T
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
A
454
G
seg5:
A
457
G
seg5:
A
478
T
seg5:
C
523
T
seg5:
C
608
T
seg5:
A
763
G
Show more
seg6
seg6:
T
9
C
seg6:
C
125
A
seg6:
C
140
T
seg6:
T
212
C
seg6:
A
358
G
seg6:
T
363
C
seg6:
C
394
T
seg6:
C
399
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
C
591
T
seg6:
A
660
C
seg6:
T
714
A
seg6:
C
769
A
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
seg6:
A
894
C
Show more
Deletions
seg4:562-570
Insertions
ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_seg6:1401:TGGGAGAATGGTTAAGTTTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTGCTAAACTTAATTGTTTCTGAAAAAT, ins_seg5:0:ATTTTCTTGTGAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
G
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
NA
NA:
P
42
Q
NA:
A
47
V
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
V
NA:
V
401
I
NP
NP:
I
9
M
NP:
T
66
A
NP:
V
453
A
Deletions
HA1:162-164
Insertions
None
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