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Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
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GS_00BUKL8.1
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Display Name: USA/GS_00BUKL8.1/2024-12-26
Paull,
J.; Messer,
K.; Adams,
G.; Nabatanzi,
D.; Dobbins,
S.; Tomkins-Tinch,
C.; Mboowa,
G.; Luebbert,
L.; Worby,
C.; Wewior,
N.; Samani,
P.; DeRuff,
K.; Blumenstiel,
B.; Moreno,
G.; Earl,
A.; Gnirke,
A.; MacInnis,
B.; Sabeti,
P.; Lemieux,
J.; Park,
D.
Submission details
Submission ID
PV206690.1.seg1/PV206691.1.seg2/PV206692.1.seg3/PV206693.1.seg4/PV206694.1.seg5/PV206695.1.seg6/PV206696.1.seg7/PV206697.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:08:10 UTC
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
Bioproject accession
PRJNA1052714
Biosample accession
SAMN47118455
INSDC accession seg1
PV206690.1
INSDC accession seg2
PV206691.1
INSDC accession seg3
PV206692.1
INSDC accession seg4
PV206693.1
INSDC accession seg5
PV206694.1
INSDC accession seg6
PV206695.1
INSDC accession seg7
PV206696.1
INSDC accession seg8
PV206697.1
NCBI release date
2025-03-03
SRA run accession
SRR32515267
Clade
Clade ha
V1A.3a.2
Clade na
B.7
Alignment states and QC metrics seg3
Completeness seg3
85.66%
Length seg3
2002
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
38
Total unknown nucs seg3
79
Alignment states and QC metrics seg4
Completeness seg4
87.32%
Length seg4
1637
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
54
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
93.20%
Length seg5
1631
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
28
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
88.94%
Length seg6
1246
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
31
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
71.67%
Length seg7
822
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
12
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
68.39%
Length seg8
729
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
15
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2024-12-26
Isolate name
MA-Broad_MGH-22980
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Alignment states and QC metrics seg1
Length seg1
2234
Alignment states and QC metrics seg2
Length seg2
1869
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg3
seg3:
C
117
T
seg3:
T
339
C
seg3:
G
414
A
seg3:
T
423
C
seg3:
G
549
A
seg3:
T
587
C
seg3:
T
588
C
seg3:
A
618
G
seg3:
T
654
C
seg3:
A
771
G
seg3:
C
813
T
seg3:
G
867
A
seg3:
C
897
T
seg3:
A
935
G
seg3:
G
936
A
seg3:
A
1054
G
seg3:
G
1056
A
seg3:
G
1065
A
Show more
seg4
seg4:
A
84
G
seg4:
C
252
A
seg4:
G
267
A
seg4:
C
270
T
seg4:
A
285
G
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
G
457
A
seg4:
G
460
A
seg4:
A
463
G
seg4:
A
477
G
Show more
seg5
seg5:
C
178
T
seg5:
A
224
G
seg5:
A
235
G
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
G
412
A
seg5:
A
454
G
seg5:
C
523
T
seg5:
C
608
T
seg5:
A
634
G
seg5:
C
703
T
seg5:
A
763
G
seg5:
C
841
T
seg5:
A
883
G
seg5:
G
1135
T
Show more
seg6
seg6:
T
155
C
seg6:
G
189
A
seg6:
T
212
C
seg6:
G
279
A
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
C
429
T
seg6:
G
462
A
seg6:
A
504
G
seg6:
C
519
T
seg6:
A
660
C
seg6:
T
714
A
seg6:
T
735
C
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
seg6:
T
903
C
Show more
seg7
seg7:
T
125
A
seg7:
A
143
G
seg7:
G
316
A
seg7:
A
419
G
seg7:
A
452
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
G
521
A
seg7:
G
536
A
seg7:
A
566
G
seg7:
C
656
T
seg7:
C
802
T
seg8
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
391
C
seg8:
C
419
T
seg8:
G
478
A
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
C
666
T
seg8:
T
775
C
seg8:
G
818
A
seg8:
C
882
T
Deletions
seg4:562-570
Insertions
None
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
A
202
V
HA1:
K
203
R
HA1:
G
256
E
HA1:
R
279
K
HA2
HA2:
D
71
N
HA2:
R
151
K
M1
M1:
R
105
K
NA
NA:
L
52
S
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
V
NA:
V
401
I
NEP
NEP:
L
30
S
NP
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
NS1:
A
212
V
NS1:
V
263
M
PA
PA:
V
196
A
PA:
K
312
R
PA:
T
352
A
PA:
S
530
T
Deletions
HA1:162-164
Insertions
None
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