GS_00BSC1Q.1

Display Name: Taiwan/GS_00BSC1Q.1/2024-12-23
Yang, S.-L.; Li, C.-H.; Lin, S.-W.

Submission details

Submission ID
PQ870109.1.seg4
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 10:32:49 UTC
Date released
2025-03-11 11:02:11 UTC

Authors

Author affiliations
Ministry of Health and Welfare, Taiwan Centers for Disease Control

Clade

Clade ha
V1A.3a.2

Alignment states and QC metrics seg4

Completeness seg4
59.31%
Length seg4
1118
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
25
Total unknown nucs seg4
0

Sample details

Collection country
Taiwan
Collection date
2024-12-23
Isolate name
HCC2312a

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg4
PQ870109.1
NCBI release date
2025-01-13

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • seg4:T663C
  • seg4:A667G
  • seg4:C669A
  • seg4:G673A
  • seg4:A686G
  • seg4:G687A
  • seg4:C699T
  • seg4:T747C
  • seg4:T753A
  • seg4:T810C
  • seg4:G846A
  • seg4:G873A
  • seg4:G914A
  • seg4:C969T
  • seg4:A1107G
  • seg4:G1119A
  • seg4:T1134C
  • seg4:T1147C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K
    • Deletions
    None
    Insertions
    None