GS_00BCNQW.1

Display Name: USA/GS_00BCNQW.1/2025-02-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV211878.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 03:03:44 UTC
Date released
2025-03-11 03:04:29 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47201425
INSDC accession
PV211878.1
NCBI release date
2025-03-10
NCBI update date
2025-03-10
SRA run accession
SRR32556940

Alignment states and QC metrics

Completeness
93.39%
Length
15140
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
131
Total unknown nucs
921

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-12
Isolate name
MN-MDH-RSVB-02165

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • C116T
  • T257C
  • G513T
  • G579A
  • C739T
  • A748G
  • T1168C
  • G1385A
  • T1427C
  • G1732A
  • G1768A
  • T1846C
  • C2030T
  • C2074T
  • C2198T
  • A2499T
  • C2554T
  • C2691T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:F12I
  • F:T118A
  • F:T121I
  • F:S190N
  • F:R209Q
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:T225P
  • G:D251N
  • G:I252T
  • G:D261N
  • G:S265A
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:S169P
  • L:K570R
  • L:N1593S
  • L:T1987I

    • N

  • N:V97I
  • N:F111L
    • Deletions
    None
    Insertions
    None