GS_00BCH48.1

Display Name: USA/GS_00BCH48.1/2025-02-07
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV211688.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 02:44:04 UTC
Date released
2025-03-11 02:44:46 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47201235
INSDC accession
PV211688.1
NCBI release date
2025-03-10
NCBI update date
2025-03-10
SRA run accession
SRR32557222

Alignment states and QC metrics

Completeness
94.77%
Length
15045
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
1
Total SNPs
216
Total unknown nucs
618

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-07
Isolate name
MN-MDH-RSVA-01973

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.5

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • G551A
  • C622T
  • G664A
  • T697C
  • A748G
  • T928C
  • G1000A
  • C1012T
  • T1019C
  • T1032C
  • T1048C
  • G1049A
  • G1050A
    • Deletions
    3148, 4592, 7555
    Insertions
    ins_2299:G

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:V127I
  • F:S377N
  • F:I384V

    • G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:E123G
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:S294P
  • G:Y304H
  • G:T319I
  • G:T320A

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:V1721I
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:S2079N

    • M

  • M:M43I

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None