GS_00BCGSY.1

Display Name: USA/GS_00BCGSY.1/2025-02-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV211676.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 02:44:04 UTC
Date released
2025-03-11 02:44:46 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47201223
INSDC accession
PV211676.1
NCBI release date
2025-03-10
NCBI update date
2025-03-10
SRA run accession
SRR32557075

Alignment states and QC metrics

Completeness
96.97%
Length
15046
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
214
Total unknown nucs
283

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-12
Isolate name
MN-MDH-RSVA-01961

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • A399G
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • G1000A
  • C1012T
  • T1035A
  • T1048C
  • G1050A
  • G1086T
  • T1359C
  • G1662A
  • T1668C
    • Deletions
    4177, 4592
    Insertions
    ins_3214:G

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T125N
  • F:A518V

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:P143S
  • G:G224E
  • G:V225A
  • G:S243I
  • G:I265L
  • G:H266Y
  • G:P276L
  • G:D284G
  • G:E295A
  • G:Y304H
  • G:L314P
  • G:T320A

    • L

  • L:I59M
  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:K1437R
  • L:L1438Q
  • L:G1550S
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:P1744T
  • L:S1789F
  • L:S1946I
  • L:Y2163N

    • M

  • M:K25R
  • M:M43I

    • N

  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None