GS_00BCER2.1

Display Name: USA/GS_00BCER2.1/2025-02-01
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV211607.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 02:44:04 UTC
Date released
2025-03-11 02:44:46 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47201154
INSDC accession
PV211607.1
NCBI release date
2025-03-10
NCBI update date
2025-03-10
SRA run accession
SRR32557279

Alignment states and QC metrics

Completeness
93.48%
Length
15050
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
200
Total unknown nucs
814

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-01
Isolate name
MN-MDH-RSVA-01892

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • T261C
  • C300T
  • A354G
  • A429T
  • T501C
  • T560C
  • A577G
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
    • Deletions
    None
    Insertions
    ins_15115:TT, ins_3154:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:E308K

    • L

  • L:P171L
  • L:K180N
  • L:R256K
  • L:S504T
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1741M

    • M

  • M:T108I

    • N

  • N:V352A

    • P

  • P:L55P
  • P:V73I
  • P:T92M

    • SH

  • SH:L30F
  • SH:C45S
    • Deletions
    None
    Insertions
    None