GS_00BC90Q.1

Display Name: USA/GS_00BC90Q.1/2025-01-20
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV246499.1.seg1/PV246500.1.seg2/PV246498.1.seg3/PV246493.1.seg4/PV246496.1.seg5/PV246495.1.seg6/PV246494.1.seg7/PV246497.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-07 21:07:29 UTC
Date released
2025-03-07 21:07:43 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2025-01-20
Isolate name
GKISBBBE62008

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV246499.1
INSDC accession seg2
PV246500.1
INSDC accession seg3
PV246498.1
INSDC accession seg4
PV246493.1
INSDC accession seg5
PV246496.1
INSDC accession seg6
PV246495.1
INSDC accession seg7
PV246494.1
INSDC accession seg8
PV246497.1
NCBI release date
2025-03-07

Alignment states and QC metrics seg1

Length seg1
2340

Alignment states and QC metrics seg2

Length seg2
2367

Alignment states and QC metrics seg3

Length seg3
2275

Alignment states and QC metrics seg4

Length seg4
1847

Alignment states and QC metrics seg5

Length seg5
1815

Alignment states and QC metrics seg6

Length seg6
1528

Alignment states and QC metrics seg7

Length seg7
1170

Alignment states and QC metrics seg8

Length seg8
1066

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None