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Influenza A/H1N1pdm
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Influenza A/H5N1
Influenza A
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RSV-A
RSV B
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GS_00BC85F.1
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Display Name: Germany/GS_00BC85F.1/2025-02-12
Ahrens,
A. K.; Harder,
T.; Grund,
C.; Beer,
M.; Pohlmann,
A.
Submission details
Submission ID
PV242375.1.seg1/PV242376.1.seg2/PV242377.1.seg3/PV242378.1.seg4/PV242379.1.seg5/PV242380.1.seg6/PV242381.1.seg7/PV242382.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-07 19:19:10 UTC
Date released
2025-03-07 19:19:39 UTC
Authors
Author affiliations
Friedrich-Loeffler-Institut, Institute of Diagnostic Virology (IVD)
Clade
Clade
2.3.4.4b
Alignment states and QC metrics seg1
Completeness seg1
98.08%
Length seg1
2296
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
285
Total unknown nucs seg1
0
Alignment states and QC metrics seg2
Completeness seg2
97.61%
Length seg2
2285
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
199
Total unknown nucs seg2
0
Alignment states and QC metrics seg3
Completeness seg3
98.34%
Length seg3
2196
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
159
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
97.44%
Length seg4
1712
Total ambiguous nucs seg4
0
Total deleted nucs seg4
3
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
185
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
98.34%
Length seg5
1539
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
99
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
96.71%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
145
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
96.59%
Length seg7
992
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
66
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.88%
Frame shifts seg8
NS1:23-26(nt:80-92)
Length seg8
864
Total ambiguous nucs seg8
0
Total deleted nucs seg8
2
Total frame shifts seg8
1
Total inserted nucs seg8
2
Total SNPs seg8
241
Total unknown nucs seg8
0
Sample details
Collection country
Germany
Collection subdivision level 1
Germany-BY
Collection date
2025-02-12
Isolate name
2025AI01283
Host
Host name scientific
Branta canadensis
Host taxon id
8853
INSDC
INSDC accession seg1
PV242375.1
INSDC accession seg2
PV242376.1
INSDC accession seg3
PV242377.1
INSDC accession seg4
PV242378.1
INSDC accession seg5
PV242379.1
INSDC accession seg6
PV242380.1
INSDC accession seg7
PV242381.1
INSDC accession seg8
PV242382.1
NCBI release date
2025-03-07
INSDC seg4
Subtype seg4
H5
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
seg1:
A
33
G
seg1:
C
55
T
seg1:
A
57
G
seg1:
C
69
T
seg1:
A
87
G
seg1:
T
105
C
seg1:
C
120
A
seg1:
A
126
G
seg1:
A
144
G
seg1:
T
159
C
seg1:
A
165
G
seg1:
A
195
T
seg1:
C
198
T
seg1:
G
210
A
seg1:
T
228
C
seg1:
A
234
G
seg1:
A
249
T
seg1:
A
252
G
Show more
seg2
seg2:
A
54
G
seg2:
T
75
C
seg2:
A
150
T
seg2:
T
171
C
seg2:
G
195
A
seg2:
T
207
C
seg2:
G
228
A
seg2:
C
241
T
seg2:
T
252
C
seg2:
T
255
C
seg2:
G
258
A
seg2:
G
261
A
seg2:
T
264
C
seg2:
G
267
A
seg2:
T
282
C
seg2:
T
285
C
seg2:
A
288
G
seg2:
G
342
T
Show more
seg3
seg3:
G
81
A
seg3:
A
93
G
seg3:
G
120
A
seg3:
G
144
A
seg3:
A
171
G
seg3:
G
195
A
seg3:
C
198
T
seg3:
A
211
G
seg3:
C
228
G
seg3:
G
249
A
seg3:
T
252
C
seg3:
A
255
G
seg3:
C
261
T
seg3:
G
270
A
seg3:
A
279
T
seg3:
T
324
C
seg3:
G
327
A
seg3:
T
333
C
Show more
seg4
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
C
102
T
seg4:
A
123
G
seg4:
T
141
C
seg4:
G
174
A
seg4:
T
183
C
seg4:
C
195
T
seg4:
C
199
T
seg4:
A
207
G
seg4:
C
219
G
seg4:
G
225
A
seg4:
G
227
A
seg4:
A
228
G
seg4:
T
264
A
seg4:
T
270
C
seg4:
A
284
G
Show more
seg5
seg5:
C
45
A
seg5:
C
53
T
seg5:
G
57
A
seg5:
A
96
G
seg5:
A
99
G
seg5:
T
111
C
seg5:
G
117
A
seg5:
A
135
G
seg5:
A
150
G
seg5:
T
165
C
seg5:
A
183
G
seg5:
T
216
C
seg5:
C
279
T
seg5:
A
312
G
seg5:
C
333
T
seg5:
C
336
T
seg5:
A
342
G
seg5:
C
348
T
Show more
seg6
seg6:
G
35
A
seg6:
A
37
G
seg6:
T
49
C
seg6:
G
66
A
seg6:
G
69
A
seg6:
T
80
C
seg6:
T
90
C
seg6:
A
92
G
seg6:
G
120
A
seg6:
C
122
T
seg6:
T
125
C
seg6:
T
134
C
seg6:
G
137
A
seg6:
A
149
G
seg6:
C
150
T
seg6:
A
155
G
seg6:
G
156
C
seg6:
T
179
C
Show more
seg7
seg7:
A
25
G
seg7:
C
46
T
seg7:
A
76
G
seg7:
G
112
A
seg7:
A
127
G
seg7:
C
142
T
seg7:
C
188
A
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
234
A
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
Show more
seg8
seg8:
G
9
A
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
seg8:
G
74
A
Show more
Deletions
seg4:1054-1056, seg8:90, seg8:93
Insertions
ins_seg8:79:TG
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
A
99
D
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
P
152
S
HA:
H
154
Q
HA:
R
156
A
HA:
S
157
P
Show more
M1
M1:
L
55
M
M1:
S
70
N
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
K
12
R
M2:
E
14
G
M2:
K
18
N
M2:
C
19
Y
M2:
D
21
G
M2:
V
28
I
M2:
I
51
V
NA
NA:
K
6
R
NA:
I
10
T
NA:
V
16
I
NA:
V
17
I
NA:
V
34
I
NA:
H
44
Y
NA:
A
46
P
NA:
F
74
C
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
V
99
I
NA:
H
100
Y
NA:
I
106
V
NA:
H
155
Y
NA:
T
188
I
NA:
M
258
I
NA:
T
289
M
Show more
NP
NP:
S
3
F
NP:
V
105
M
NP:
M
136
L
NP:
A
234
S
NP:
A
353
V
NP:
N
395
T
NP:
S
451
A
NS1
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
A
NS1:
M
59
R
NS1:
E
60
A
NS1:
K
63
L
NS1:
D
67
R
NS1:
K
70
E
NS1:
S
71
E
Show more
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
E
36
G
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
E
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
PA
PA:
I
63
V
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
K
228
N
PA:
K
262
T
PA:
R
361
K
PA:
K
399
E
PA:
P
400
S
PA:
V
432
I
PA:
L
504
I
PA:
R
536
K
PA:
R
544
E
PA:
E
553
A
PA:
P
585
L
PA:
F
586
L
PA:
I
621
V
PA:
E
688
G
PA:
R
716
K
PAX
PAX:
I
63
V
PAX:
T
129
I
PAX:
S
193
N
PAX:
K
198
R
PAX:
G
209
E
PAX:
L
210
P
PAX:
S
219
Y
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
Q
PB1
PB1:
K
134
N
PB1:
E
172
D
PB1:
G
177
E
PB1:
I
182
T
PB1:
M
195
V
PB1:
S
216
N
PB1:
N
328
H
PB1:
S
375
N
PB1:
K
387
R
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
P
598
L
PB1:
A
609
V
PB1:
G
610
C
Show more
PB2
PB2:
T
105
A
PB2:
I
229
V
PB2:
I
292
V
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
L
464
M
PB2:
A
471
T
PB2:
V
496
A
PB2:
Q
508
R
PB2:
S
579
P
PB2:
S
590
G
PB2:
P
628
Q
PB2:
R
699
K
PB2:
M
727
G
PB2:
D
740
N
PB2:
F
741
S
Deletions
HA:344, NS1:27
Insertions
None
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