GS_00BC7T5.1

Display Name: USA/GS_00BC7T5.1/2025-01-27
Paull, J.; Messer, K.; Adams, G.; Nabatanzi, D.; Dobbins, S.; Tomkins-Tinch, C.; Mboowa, G.; Luebbert, L.; Worby, C.; Wewior, N.; Samani, P.; DeRuff, K.; Blumenstiel, B.; Moreno, G.; Earl, A.; Gnirke, A.; MacInnis, B.; Sabeti, P.; Lemieux, J.; Park, D.

Submission details

Submission ID
PV242557.1.seg1/PV242558.1.seg3/PV242559.1.seg4/PV242560.1.seg5/PV242561.1.seg6/PV242562.1.seg7/PV242563.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-07 15:06:31 UTC
Date released
2025-03-07 15:06:42 UTC

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

Bioproject accession
PRJNA1052714
Biosample accession
SAMN47202677
INSDC accession seg1
PV242557.1
INSDC accession seg3
PV242558.1
INSDC accession seg4
PV242559.1
INSDC accession seg5
PV242560.1
INSDC accession seg6
PV242561.1
INSDC accession seg7
PV242562.1
INSDC accession seg8
PV242563.1
NCBI release date
2025-03-07
SRA run accession
SRR32579560

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2025-01-27
Isolate name
MA-Broad_MGH-23170

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2261

Alignment states and QC metrics seg3

Length seg3
1787

Alignment states and QC metrics seg4

Length seg4
1741

Alignment states and QC metrics seg5

Length seg5
1706

Alignment states and QC metrics seg6

Length seg6
1129

Alignment states and QC metrics seg7

Length seg7
1025

Alignment states and QC metrics seg8

Length seg8
853

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None