GS_00BC7LK.1

Display Name: USA/GS_00BC7LK.1/2024-12-31
Paull, J.; Messer, K.; Adams, G.; Nabatanzi, D.; Dobbins, S.; Tomkins-Tinch, C.; Mboowa, G.; Luebbert, L.; Worby, C.; Wewior, N.; Samani, P.; DeRuff, K.; Blumenstiel, B.; Moreno, G.; Earl, A.; Gnirke, A.; MacInnis, B.; Sabeti, P.; Lemieux, J.; Park, D.

Submission details

Submission ID
PV242501.1.seg1/PV242502.1.seg2/PV242503.1.seg3/PV242504.1.seg4/PV242505.1.seg5/PV242506.1.seg6/PV242507.1.seg7/PV242508.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-07 15:06:31 UTC
Date released
2025-03-07 15:06:42 UTC

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

Bioproject accession
PRJNA1052714
Biosample accession
SAMN47202838
INSDC accession seg1
PV242501.1
INSDC accession seg2
PV242502.1
INSDC accession seg3
PV242503.1
INSDC accession seg4
PV242504.1
INSDC accession seg5
PV242505.1
INSDC accession seg6
PV242506.1
INSDC accession seg7
PV242507.1
INSDC accession seg8
PV242508.1
NCBI release date
2025-03-07
SRA run accession
SRR32579609

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2024-12-31
Isolate name
MA-Broad_MGH-23009

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2332

Alignment states and QC metrics seg2

Length seg2
2253

Alignment states and QC metrics seg3

Length seg3
2178

Alignment states and QC metrics seg4

Length seg4
1815

Alignment states and QC metrics seg5

Length seg5
1760

Alignment states and QC metrics seg6

Length seg6
1455

Alignment states and QC metrics seg7

Length seg7
1128

Alignment states and QC metrics seg8

Length seg8
957

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None