GS_00AWELA.1

Display Name: USA/GS_00AWELA.1/2024-12-15
Paull, J.; Messer, K.; Adams, G.; Nabatanzi, D.; Dobbins, S.; Tomkins-Tinch, C.; Mboowa, G.; Luebbert, L.; Worby, C.; Wewior, N.; Samani, P.; DeRuff, K.; Blumenstiel, B.; Moreno, G.; Earl, A.; Gnirke, A.; MacInnis, B.; Sabeti, P.; Lemieux, J.; Park, D.

Submission details

Submission ID
PV204702.1.seg1/PV204703.1.seg2/PV204704.1.seg3/PV204705.1.seg4/PV204706.1.seg5/PV204707.1.seg6/PV204708.1.seg7/PV204709.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 14:24:59 UTC
Date released
2025-03-05 16:36:35 UTC

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

Bioproject accession
PRJNA1052714
Biosample accession
SAMN47118384
INSDC accession seg1
PV204702.1
INSDC accession seg2
PV204703.1
INSDC accession seg3
PV204704.1
INSDC accession seg4
PV204705.1
INSDC accession seg5
PV204706.1
INSDC accession seg6
PV204707.1
INSDC accession seg7
PV204708.1
INSDC accession seg8
PV204709.1
NCBI release date
2025-03-03
SRA run accession
SRR32515231

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2024-12-15
Isolate name
MA-Broad_MGH-22909

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1718

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1438

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Clade

HA subtype
H3
NA subtype
N2

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None