GS_00AVTY9.1

Display Name: USA/GS_00AVTY9.1/2025-02-11
Kirby, M. K.; Garten, R.; Davis, T.; Dugan, V.; Sheffield, S.; Liddell, J.; Frederick, J. C.; Di, H.; Wilson, M.; De La Cruz, J.; Keong, L.; Lacek, K. A.; Shu, B.; Schatzman, S.; Nguyen, H.; Matzinger, S.; Rossheim, A.; Donaghy, D.; Cassidy, F.; Wellbrock, A.; Owen, M.; Aragon, D.

Submission details

Submission ID
PV177837.1.seg1/PV177835.1.seg2/PV177839.1.seg3/PV177834.1.seg4/PV177841.1.seg5/PV177836.1.seg6/PV177838.1.seg7/PV177840.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 14:24:59 UTC
Date released
2025-03-05 16:35:39 UTC

Authors

Author affiliations
Centers for Disease Control and Prevention, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg1
PV177837.1
INSDC accession seg2
PV177835.1
INSDC accession seg3
PV177839.1
INSDC accession seg4
PV177834.1
INSDC accession seg5
PV177841.1
INSDC accession seg6
PV177836.1
INSDC accession seg7
PV177838.1
INSDC accession seg8
PV177840.1
NCBI release date
2025-02-26

Sample details

Collection country
USA
Collection subdivision level 1
Colorado
Collection date
2025-02-11
Isolate name
EPI_ISL_19749443

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2316

Alignment states and QC metrics seg2

Length seg2
2316

Alignment states and QC metrics seg3

Length seg3
2208

Alignment states and QC metrics seg4

Length seg4
1749

Alignment states and QC metrics seg5

Length seg5
1540

Alignment states and QC metrics seg6

Length seg6
1425

Alignment states and QC metrics seg7

Length seg7
1002

Alignment states and QC metrics seg8

Length seg8
865

INSDC seg4

Subtype seg4
H5

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H5
NA subtype
N1

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None