GS_00AV8DZ.1

Display Name: USA/GS_00AV8DZ.1/2024-12-16
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PQ850175.1.seg1/PQ850174.1.seg2/PQ850173.1.seg3/PQ850168.1.seg4/PQ850171.1.seg5/PQ850170.1.seg6/PQ850169.1.seg7/PQ850172.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-22 16:54:04 UTC
Date released
2025-01-22 16:55:11 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-22 16:54insdc_ingest_userOPEN

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2024-12-16
Isolate name
GKISBBBE42749

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PQ850175.1
INSDC accession seg2
PQ850174.1
INSDC accession seg3
PQ850173.1
INSDC accession seg4
PQ850168.1
INSDC accession seg5
PQ850171.1
INSDC accession seg6
PQ850170.1
INSDC accession seg7
PQ850169.1
INSDC accession seg8
PQ850172.1
NCBI release date
2025-01-08

Alignment states and QC metrics seg1

Length seg1
2318

Alignment states and QC metrics seg2

Length seg2
2316

Alignment states and QC metrics seg3

Length seg3
2204

Alignment states and QC metrics seg4

Length seg4
1737

Alignment states and QC metrics seg5

Length seg5
1541

Alignment states and QC metrics seg6

Length seg6
1443

Alignment states and QC metrics seg7

Length seg7
1004

Alignment states and QC metrics seg8

Length seg8
867

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Clade

HA subtype
H3
NA subtype
N2

Nucleotide mutations

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Substitutions
Deletions
None
Insertions
None