GS_00ATAYW.1

Display Name: USA/GS_00ATAYW.1/2024-12-10
Aufderhar, M.; Franzen, K.; Killian, M.; Lantz, K.; Stuber, T.; Hicks, J.; Norris, C.; Lakin, S.

Submission details

Submission ID
PQ833914.1.seg1/PQ833915.1.seg2/PQ833916.1.seg3/PQ833917.1.seg4/PQ833918.1.seg5/PQ833919.1.seg6/PQ833920.1.seg7/PQ833921.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-13 15:32:44 UTC
Date released
2025-01-13 16:40:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-13 15:34insdc_ingest_userOPEN

Authors

Author affiliations
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories

INSDC

Bioproject accession
PRJNA1102327
Biosample accession
SAMN45953551
INSDC accession seg1
PQ833914.1
INSDC accession seg2
PQ833915.1
INSDC accession seg3
PQ833916.1
INSDC accession seg4
PQ833917.1
INSDC accession seg5
PQ833918.1
INSDC accession seg6
PQ833919.1
INSDC accession seg7
PQ833920.1
INSDC accession seg8
PQ833921.1
NCBI release date
2025-01-03
SRA run accession
SRR31820916

Sample details

Collection country
USA
Collection subdivision level 1
CA
Collection date
2024-12-10
Isolate name
24-037219-029-original

Host

Host name scientific
Gallus gallus
Host taxon id
9031

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1704

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1410

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H5

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H5
NA subtype
N1

Nucleotide mutations

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Substitutions
Deletions
None
Insertions
None