GS_001Z02W.1

Display Name: USA/GS_001Z02W.1/2024-12-29
Paull, J.; Messer, K.; Adams, G.; Nabatanzi, D.; Dobbins, S.; Tomkins-Tinch, C.; Mboowa, G.; Luebbert, L.; Worby, C.; Wewior, N.; Samani, P.; DeRuff, K.; Blumenstiel, B.; Moreno, G.; Earl, A.; Gnirke, A.; MacInnis, B.; Sabeti, P.; Lemieux, J.; Park, D.

Submission details

Submission ID
PV206706.1.seg1/PV206707.1.seg2/PV206708.1.seg3/PV206709.1.seg4/PV206710.1.seg5/PV206711.1.seg6/PV206712.1.seg7/PV206713.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 13:05:08 UTC
Date released
2025-03-05 13:12:57 UTC

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

Bioproject accession
PRJNA1052714
Biosample accession
SAMN47118469
INSDC accession seg1
PV206706.1
INSDC accession seg2
PV206707.1
INSDC accession seg3
PV206708.1
INSDC accession seg4
PV206709.1
INSDC accession seg5
PV206710.1
INSDC accession seg6
PV206711.1
INSDC accession seg7
PV206712.1
INSDC accession seg8
PV206713.1
NCBI release date
2025-03-03
SRA run accession
SRR32515253

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2024-12-29
Isolate name
MA-Broad_MGH-22994

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2329

Alignment states and QC metrics seg2

Length seg2
2272

Alignment states and QC metrics seg3

Length seg3
2179

Alignment states and QC metrics seg4

Length seg4
1797

Alignment states and QC metrics seg5

Length seg5
1760

Alignment states and QC metrics seg6

Length seg6
1454

Alignment states and QC metrics seg7

Length seg7
1124

Alignment states and QC metrics seg8

Length seg8
1013

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None