GS_001Z000.1

Display Name: USA/GS_001Z000.1/2024-12-26
Paull, J.; Messer, K.; Adams, G.; Nabatanzi, D.; Dobbins, S.; Tomkins-Tinch, C.; Mboowa, G.; Luebbert, L.; Worby, C.; Wewior, N.; Samani, P.; DeRuff, K.; Blumenstiel, B.; Moreno, G.; Earl, A.; Gnirke, A.; MacInnis, B.; Sabeti, P.; Lemieux, J.; Park, D.

Submission details

Submission ID
PV206690.1.seg1/PV206691.1.seg2/PV206692.1.seg3/PV206693.1.seg4/PV206694.1.seg5/PV206695.1.seg6/PV206696.1.seg7/PV206697.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 13:05:08 UTC
Date released
2025-03-05 13:12:57 UTC

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

Bioproject accession
PRJNA1052714
Biosample accession
SAMN47118455
INSDC accession seg1
PV206690.1
INSDC accession seg2
PV206691.1
INSDC accession seg3
PV206692.1
INSDC accession seg4
PV206693.1
INSDC accession seg5
PV206694.1
INSDC accession seg6
PV206695.1
INSDC accession seg7
PV206696.1
INSDC accession seg8
PV206697.1
NCBI release date
2025-03-03
SRA run accession
SRR32515267

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2024-12-26
Isolate name
MA-Broad_MGH-22980

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2234

Alignment states and QC metrics seg2

Length seg2
1869

Alignment states and QC metrics seg3

Length seg3
2002

Alignment states and QC metrics seg4

Length seg4
1637

Alignment states and QC metrics seg5

Length seg5
1631

Alignment states and QC metrics seg6

Length seg6
1246

Alignment states and QC metrics seg7

Length seg7
822

Alignment states and QC metrics seg8

Length seg8
729

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None