GS_001YYKZ.1

Display Name: USA/GS_001YYKZ.1/2024-12-07
Steel, J.; Kirby, M.; Garten, R.; Davis, T.; Dugan, V.

Submission details

Submission ID
PV151184.1.seg1/PV151183.1.seg2/PV151185.1.seg3/PV151186.1.seg4/PV151187.1.seg5/PV151188.1.seg6/PV151189.1.seg7/PV151190.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 13:05:08 UTC
Date released
2025-03-05 13:12:57 UTC

Authors

Author affiliations
Centers for Disease Control and Prevention, Influenza Division

INSDC

Bioproject accession
PRJNA998882
INSDC accession seg1
PV151184.1
INSDC accession seg2
PV151183.1
INSDC accession seg3
PV151185.1
INSDC accession seg4
PV151186.1
INSDC accession seg5
PV151187.1
INSDC accession seg6
PV151188.1
INSDC accession seg7
PV151189.1
INSDC accession seg8
PV151190.1
NCBI release date
2025-02-20

Sample details

Collection country
USA
Collection subdivision level 1
Oregon
Collection date
2024-12-07
Isolate name
EPI_ISL_19678742

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2340

Alignment states and QC metrics seg2

Length seg2
2367

Alignment states and QC metrics seg3

Length seg3
2275

Alignment states and QC metrics seg4

Length seg4
1847

Alignment states and QC metrics seg5

Length seg5
1815

Alignment states and QC metrics seg6

Length seg6
1527

Alignment states and QC metrics seg7

Length seg7
1154

Alignment states and QC metrics seg8

Length seg8
1066

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None