GS_001XTJ8.1

Display Name: USA/GS_001XTJ8.1/2024-12-05
Fox, E. B.; Garrigues, J. M.; Green, N. M.

Submission details

Submission ID
PV075218.1.seg1/PV075219.1.seg2/PV075217.1.seg3/PV075213.1.seg4/PV075215.1.seg5/PV075214.1.seg7/PV075216.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 13:05:08 UTC
Date released
2025-03-05 13:12:22 UTC

Authors

Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2024-12-05
Isolate name
LACPHL-INF01083

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV075218.1
INSDC accession seg2
PV075219.1
INSDC accession seg3
PV075217.1
INSDC accession seg4
PV075213.1
INSDC accession seg5
PV075215.1
INSDC accession seg7
PV075214.1
INSDC accession seg8
PV075216.1
NCBI release date
2025-02-06

Alignment states and QC metrics seg1

Length seg1
2263

Alignment states and QC metrics seg2

Length seg2
2313

Alignment states and QC metrics seg3

Length seg3
2181

Alignment states and QC metrics seg4

Length seg4
1749

Alignment states and QC metrics seg5

Length seg5
1683

Alignment states and QC metrics seg7

Length seg7
1139

Alignment states and QC metrics seg8

Length seg8
1034

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None