GS_001XSFG.1

Display Name: USA/GS_001XSFG.1/2024-12-22
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PQ849947.1.seg2/PQ849946.1.seg3/PQ849943.1.seg4/PQ849945.1.seg5/PQ849944.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 13:05:08 UTC
Date released
2025-03-05 13:12:22 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2024-12-22
Isolate name
GKISBBBE62299

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg2
PQ849947.1
INSDC accession seg3
PQ849946.1
INSDC accession seg4
PQ849943.1
INSDC accession seg5
PQ849945.1
INSDC accession seg6
PQ849944.1
NCBI release date
2025-01-08

Alignment states and QC metrics seg2

Length seg2
2367

Alignment states and QC metrics seg3

Length seg3
2277

Alignment states and QC metrics seg4

Length seg4
1847

Alignment states and QC metrics seg5

Length seg5
1815

Alignment states and QC metrics seg6

Length seg6
1528

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None