GS_001HH55.1

Display Name: GS_001HH55.1/2024-11-13
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788229.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910144
INSDC accession
PQ788229.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780977

Alignment states and QC metrics

Completeness
94.40%
Length
15046
Total ambiguous nucs
4
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
227
Total unknown nucs
671

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-13
Isolate name
MN-MDH-RSVA-01090

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.1

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • T497C
  • G558A
  • G587T
  • C691T
  • G1034A
  • G1050A
  • G1077A
  • G1079T
  • T1312C
  • T1326C
  • T1359C
  • G1368A
  • G1383A
  • T1413A
  • T1422C
  • T1767C
    • Deletions
    4175, 4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:L20F
  • F:F22I
  • F:K65R
  • F:T91I
  • F:S276N

    • G

  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:K192N
  • G:G224E
  • G:P230T
  • G:S243I
  • G:T249I
  • G:S250F
  • G:H258Q
  • G:K262E
  • G:E263K
  • G:I265L
  • G:H266L
  • G:S267L
  • G:D284G

    • L

  • L:D159G
  • L:P171L
  • L:R256K
  • L:V445I
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • N

  • N:V352A

    • P

  • P:T92M

    • SH

  • SH:T26I
    • Deletions
    None
    Insertions
    None