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GS_001HGQ1.1
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Display Name: GS_001HGQ1.1/2024-11-11
Kunerth,
H.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PQ788214.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-29 03:43
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910159
INSDC accession
PQ788214.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780961
Alignment states and QC metrics
Completeness
95.58%
Length
15050
Total ambiguous nucs
0
Total deleted nucs
7
Total frame shifts
0
Total inserted nucs
10
Total SNPs
227
Total unknown nucs
495
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-11
Isolate name
MN-MDH-RSVA-01105
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Substitutions
C
90
T
C
183
T
T
372
C
C
411
A
G
587
T
C
589
T
C
657
T
G
1034
A
T
1035
A
G
1050
A
G
1077
A
A
1197
T
T
1359
C
T
1413
A
T
1422
C
A
1518
G
C
1788
T
C
1806
T
Show more
Deletions
4174-4180
Insertions
ins_15115:TAATTTTTT, ins_3154:A
Amino acid mutations
Substitutions
F
F:
T
12
I
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
I
114
T
G:
V
131
D
G:
I
134
K
G:
I
141
T
G:
N
160
D
G:
N
178
G
G:
T
210
A
G:
G
224
E
G:
S
243
I
G:
T
245
I
G:
K
253
R
G:
H
258
Q
G:
K
262
E
G:
I
265
L
Show more
L
L:
P
171
L
L:
F
231
S
L:
I
232
T
L:
Y
249
H
L:
Y
254
H
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
T
1773
P
L:
V
1803
A
N
N:
V
352
A
NS2
NS2:
P
20
L
P
P:
L
55
P
P:
V
73
I
P:
T
92
M
SH
SH:
V
49
A
Deletions
None
Insertions
None
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