GS_001HG9Y.1

Display Name: GS_001HG9Y.1/2024-11-26
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788199.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910174
INSDC accession
PQ788199.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780912

Alignment states and QC metrics

Completeness
97.27%
Length
15045
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
219
Total unknown nucs
237

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-26
Isolate name
MN-MDH-RSVA-01120

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Substitutions

  • C90T
  • T142C
  • C183T
  • G198A
  • T210C
  • A399G
  • A500T
  • C528A
  • G551A
  • G555A
  • C622T
  • T659C
  • G664A
  • T697C
  • T922C
  • C952T
  • G1000A
  • C1012T
    • Deletions
    4591, 4592
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:S560P
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:K1726R
  • L:G1731D
  • L:S1789F
  • L:H1897N
  • L:Y2163N

    • M

  • M:M43I

    • N

  • N:I129V
  • N:T180A
  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None