GS_001HG80.1

Display Name: GS_001HG80.1/2024-11-27
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788198.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910175
INSDC accession
PQ788198.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780911

Alignment states and QC metrics

Completeness
95.56%
Length
15051
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
4
Total SNPs
203
Total unknown nucs
497

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-27
Isolate name
MN-MDH-RSVA-01121

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • G192A
  • G587T
  • C589T
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • A1361G
  • C1403T
  • T1413A
  • T1422C
  • C1788T
  • C1806T
  • T2165C
  • A2392G
  • C2410T
    • Deletions
    None
    Insertions
    ins_15115:TT, ins_3154:AA

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:A23T
  • F:K123R

    • G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:S243I
  • G:T245A
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:P298L

    • L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:S1593G
  • L:N1723S
  • L:G1731D
  • L:K2064R
  • L:T2069A

    • N

  • N:K84R
  • N:T98I
  • N:V352A

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None