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Influenza A/H5N1
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GS_001HE58.1
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Display Name: GS_001HE58.1/2024-11-22
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PQ798758.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:38:41 UTC
Date released
2024-12-29 03:39:04 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-29 03:38
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910246
INSDC accession
PQ798758.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780985
Alignment states and QC metrics
Completeness
96.91%
Length
15139
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
4
Total SNPs
142
Total unknown nucs
386
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-22
Isolate name
MN-MDH-RSVB-01192
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
513
T
G
579
A
G
649
A
A
664
G
C
688
T
G
781
A
T
960
C
C
998
A
T
1033
C
G
1385
A
G
1732
A
T
1846
C
C
2198
T
T
2406
C
T
2457
C
C
2554
T
C
2691
T
A
2892
T
Show more
Deletions
973, 3201, 4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
R
42
K
F:
L
125
P
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
I
87
T
G:
L
91
F
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
L
217
P
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
G
146
D
L:
C
195
R
L:
K
570
R
L:
I
1224
V
L:
K
1637
R
L:
R
1759
K
L:
I
1773
V
L:
V
1965
I
L:
T
1987
I
L:
V
2077
I
L:
L
2162
F
N
N:
V
97
I
NS2
NS2:
I
27
M
Deletions
None
Insertions
None
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