GenSpectrum
Influenza A/H5N1
Influenza A/H5N1
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_001GQ7X.1
Download
Download FASTA
Download metadata TSV
Display Name: GS_001GQ7X.1/2024-10-28
Ahrens,
A. K.; Harder,
T.; Grund,
C.; Beer,
M.; Pohlmann,
A.
Submission details
Submission ID
PQ736173.1.seg1/PQ736174.1.seg2/PQ736175.1.seg3/PQ736176.1.seg4/PQ736177.1.seg5/PQ736178.1.seg6/PQ736179.1.seg7/PQ736180.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 18:29:08 UTC
Date released
2024-12-11 18:29:17 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 18:29
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Friedrich-Loeffler-Institut, Institute of Diagnostic Virology (IVD)
Clade
Clade
2.3.4.4b
Alignment states and QC metrics seg1
Completeness seg1
21.23%
Length seg1
497
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
55
Total unknown nucs seg1
0
Alignment states and QC metrics seg2
Completeness seg2
38.40%
Length seg2
899
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
87
Total unknown nucs seg2
0
Alignment states and QC metrics seg3
Completeness seg3
20.51%
Length seg3
458
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
28
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
38.69%
Length seg4
681
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
53
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
96.81%
Length seg5
1515
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
95
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
63.24%
Length seg6
922
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
87
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
95.23%
Length seg7
978
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
64
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
98.27%
Length seg8
850
Total ambiguous nucs seg8
0
Total deleted nucs seg8
10
Total frame shifts seg8
0
Total inserted nucs seg8
10
Total SNPs seg8
221
Total unknown nucs seg8
0
Sample details
Collection country
Germany
Collection subdivision level 1
Germany-BY
Collection date
2024-10-28
Isolate name
2024AI04543
Host
Host name scientific
Anser
Host taxon id
8842
INSDC
INSDC accession seg1
PQ736173.1
INSDC accession seg2
PQ736174.1
INSDC accession seg3
PQ736175.1
INSDC accession seg4
PQ736176.1
INSDC accession seg5
PQ736177.1
INSDC accession seg6
PQ736178.1
INSDC accession seg7
PQ736179.1
INSDC accession seg8
PQ736180.1
NCBI release date
2024-12-11
Nucleotide mutations
Substitutions
seg1
seg1:
A
1830
G
seg1:
T
1845
G
seg1:
T
1846
C
seg1:
T
1860
C
seg1:
C
1875
A
seg1:
G
1881
C
seg1:
G
1908
A
seg1:
C
1910
A
seg1:
C
1914
T
seg1:
A
1917
G
seg1:
G
1923
A
seg1:
T
1929
C
seg1:
A
1935
G
seg1:
G
1941
A
seg1:
T
1944
C
seg1:
G
1947
T
seg1:
A
1950
G
seg1:
C
1953
T
Show more
seg2
seg2:
T
1431
C
seg2:
A
1440
G
seg2:
A
1446
G
seg2:
T
1452
C
seg2:
C
1457
G
seg2:
G
1461
A
seg2:
T
1479
C
seg2:
G
1493
T
seg2:
A
1497
G
seg2:
C
1509
T
seg2:
C
1515
T
seg2:
G
1524
A
seg2:
C
1527
T
seg2:
A
1530
G
seg2:
C
1533
T
seg2:
T
1575
C
seg2:
T
1578
C
seg2:
G
1584
A
Show more
seg3
seg3:
A
1764
G
seg3:
G
1770
A
seg3:
C
1778
T
seg3:
T
1780
C
seg3:
A
1785
G
seg3:
G
1797
A
seg3:
A
1836
G
seg3:
A
1839
G
seg3:
T
1848
C
seg3:
A
1851
G
seg3:
A
1885
G
seg3:
A
1890
G
seg3:
G
1902
A
seg3:
A
1905
G
seg3:
G
1911
A
seg3:
C
1923
T
seg3:
C
1941
A
seg3:
A
1944
G
Show more
seg4
seg4:
T
1083
G
seg4:
G
1092
A
seg4:
A
1113
T
seg4:
A
1158
G
seg4:
T
1182
C
seg4:
C
1203
T
seg4:
G
1221
A
seg4:
G
1245
A
seg4:
C
1254
A
seg4:
A
1266
G
seg4:
G
1278
A
seg4:
A
1299
G
seg4:
G
1305
A
seg4:
C
1306
A
seg4:
G
1308
A
seg4:
T
1338
C
seg4:
G
1356
A
seg4:
T
1371
C
Show more
seg5
seg5:
C
45
A
seg5:
G
57
A
seg5:
A
96
G
seg5:
A
99
G
seg5:
T
111
C
seg5:
A
135
G
seg5:
A
150
G
seg5:
T
165
C
seg5:
A
183
G
seg5:
T
216
C
seg5:
C
279
T
seg5:
A
312
G
seg5:
C
333
T
seg5:
C
336
T
seg5:
A
342
G
seg5:
C
348
T
seg5:
A
351
G
seg5:
G
358
A
Show more
seg6
seg6:
C
521
T
seg6:
A
527
G
seg6:
T
530
C
seg6:
C
533
T
seg6:
G
539
A
seg6:
G
545
A
seg6:
C
572
T
seg6:
C
583
T
seg6:
T
591
C
seg6:
T
599
C
seg6:
A
602
T
seg6:
C
611
T
seg6:
G
623
A
seg6:
G
629
T
seg6:
A
641
G
seg6:
C
647
T
seg6:
A
659
G
seg6:
G
680
A
Show more
seg7
seg7:
C
46
T
seg7:
A
76
G
seg7:
G
112
A
seg7:
A
127
G
seg7:
C
142
T
seg7:
C
188
A
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
seg7:
A
322
G
seg7:
G
331
A
Show more
seg8
seg8:
G
9
A
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
Show more
Deletions
seg8:90, seg8:93, seg8:226-228, seg8:263, seg8:359-362
Insertions
ins_seg8:367:TCAG, ins_seg8:266:G, ins_seg8:221:G, ins_seg8:231:AT, ins_seg8:79:TG
Amino acid mutations
Substitutions
HA
HA:
Q
429
K
HA:
K
499
R
HA:
N
515
K
HA:
S
520
N
HA:
M
527
I
HA:
V
539
A
HA:
V
549
M
M2
M2:
K
12
R
M2:
E
14
G
M2:
K
18
N
M2:
C
19
Y
M2:
D
21
G
M2:
V
28
I
M2:
I
51
V
NA
NA:
T
188
I
NA:
M
258
I
NA:
E
259
K
NA:
T
289
M
NA:
Q
308
K
NA:
G
336
S
NA:
V
338
M
NA:
P
340
S
NA:
N
366
S
NA:
G
382
E
NA:
S
405
T
NA:
I
418
M
NA:
S
434
N
NA:
D
460
G
NP
NP:
V
105
M
NP:
M
136
L
NP:
A
234
S
NP:
A
353
V
NP:
N
395
T
NP:
S
451
A
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
E
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
NS2:
I
86
R
Show more
PB1
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
P
598
L
PB1:
A
609
V
PB1:
G
610
C
PB1:
N
694
S
PB1:
G
754
R
PB2
PB2:
P
628
Q
PB2:
R
699
K
PB2:
M
727
G
PB2:
F
741
S
Deletions
None
Insertions
None
Load sequences