GenSpectrum
Influenza A/H5N1
Influenza A/H5N1
RSV-A
RSV B
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GS_001GPWK.1
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Display Name: GS_001GPWK.1/2024-11-12
Kirby,
M. K.; Steel,
J.; Garten,
R.; Davis,
T.; Dugan,
V.; Rambo-Martin,
B.; Sheffield,
S.; Liddell,
J.; Frederick,
J. C.; Di,
H.; Radford,
K.; De La Cruz,
J.; Keong,
L.; Lacek,
K. A.; Shu,
B.; Schatzman,
S.; Nguyen,
H.; Molinar,
B.; Wright,
C.; Guevara,
H.; Pan,
C.-Y.; Morales,
C.; Wadford,
D.; Pinsky,
B.; Kumar Sahoo,
M.
Submission details
Submission ID
PQ724471.1.seg2/PQ724474.1.seg4/PQ724472.1.seg5/PQ724473.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-10 04:17:08 UTC
Date released
2024-12-10 04:17:16 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-10 04:17
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
INSDC
Bioproject accession
PRJNA1095491
INSDC accession seg2
PQ724471.1
INSDC accession seg4
PQ724474.1
INSDC accession seg5
PQ724472.1
INSDC accession seg6
PQ724473.1
NCBI release date
2024-12-09
Clade
Clade
2.3.4.4b
Alignment states and QC metrics seg2
Completeness seg2
38.32%
Length seg2
897
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
112
Total unknown nucs seg2
0
Alignment states and QC metrics seg4
Completeness seg4
33.01%
Length seg4
581
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
47
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
98.40%
Length seg5
1540
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
182
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
97.81%
Length seg6
1426
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
150
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2024-11-12
Isolate name
EPI_ISL_19597300
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Substitutions
seg2
seg2:
T
1431
C
seg2:
A
1437
G
seg2:
A
1440
G
seg2:
T
1443
A
seg2:
C
1457
G
seg2:
G
1461
A
seg2:
T
1470
A
seg2:
T
1479
C
seg2:
C
1480
A
seg2:
G
1493
T
seg2:
C
1506
T
seg2:
C
1509
T
seg2:
C
1515
T
seg2:
G
1524
A
seg2:
C
1527
T
seg2:
C
1536
T
seg2:
T
1542
C
seg2:
C
1549
T
Show more
seg4
seg4:
C
1134
T
seg4:
A
1158
G
seg4:
A
1167
G
seg4:
T
1182
C
seg4:
T
1197
C
seg4:
C
1203
T
seg4:
G
1221
A
seg4:
G
1245
A
seg4:
C
1254
A
seg4:
A
1266
G
seg4:
G
1278
A
seg4:
A
1299
G
seg4:
C
1306
A
seg4:
G
1308
A
seg4:
T
1338
A
seg4:
G
1356
A
seg4:
T
1371
C
seg4:
A
1377
G
Show more
seg5
seg5:
A
40
C
seg5:
G
57
A
seg5:
T
72
C
seg5:
G
81
A
seg5:
A
96
G
seg5:
T
111
C
seg5:
G
117
A
seg5:
T
147
C
seg5:
T
153
C
seg5:
G
159
A
seg5:
T
162
C
seg5:
T
165
C
seg5:
A
183
G
seg5:
C
195
T
seg5:
C
198
T
seg5:
T
199
C
seg5:
T
201
C
seg5:
A
207
G
Show more
seg6
seg6:
G
35
A
seg6:
T
43
C
seg6:
G
69
A
seg6:
A
78
G
seg6:
T
80
C
seg6:
T
90
C
seg6:
A
92
G
seg6:
C
122
T
seg6:
T
125
C
seg6:
T
134
C
seg6:
G
137
A
seg6:
C
150
T
seg6:
A
155
G
seg6:
G
156
C
seg6:
T
179
C
seg6:
T
185
C
seg6:
A
191
G
seg6:
A
212
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
HA
HA:
Q
429
K
HA:
K
499
R
HA:
N
515
K
HA:
M
527
V
HA:
V
539
A
HA:
V
549
M
NA
NA:
I
8
T
NA:
V
17
I
NA:
I
20
V
NA:
H
44
Y
NA:
A
46
P
NA:
V
67
I
NA:
N
71
S
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
V
99
I
NA:
H
100
Y
NA:
K
111
E
NA:
H
155
Y
NA:
T
188
I
NA:
M
258
I
NA:
L
269
M
NA:
E
287
D
Show more
NP
NP:
Y
52
H
NP:
V
105
M
NP:
I
119
V
NP:
M
136
L
NP:
A
353
V
NP:
S
450
N
NP:
S
451
A
NP:
S
482
N
PB1
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
A
587
P
PB1:
P
598
L
PB1:
A
609
V
PB1:
G
610
C
PB1:
G
754
R
Deletions
None
Insertions
None
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