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Influenza A/H5N1
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GS_001E1KZ.1
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Display Name: GS_001E1KZ.1/2024-07-18
Franco,
D.; Goya,
S.; Martinez,
A.; Moreno,
B.; Valdespino,
E.; Gaitan,
M.; Gonzalez,
C.; Moreno,
A.; Capitan-Barrios,
Z.; Carrera,
J. P.; Lopez-Verges,
S.; Pascale,
J. M.; Das,
S. R.; Arbiza,
J.; Delfraro,
A.; Abrego,
L.
Submission details
Submission ID
PQ618119.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-26 17:57:01 UTC
Date released
2024-11-26 17:57:27 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-26 17:57
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Gorgas Memorial Institute of Health Studies, Department of Research in Virology and Biotechnology
Alignment states and QC metrics
Completeness
99.93%
Length
15216
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
6
Total SNPs
142
Total unknown nucs
0
Sample details
Collection country
Panama
Collection date
2024-07-18
Isolate name
hRSV/B/Panama/ICGES-381/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ618119.1
NCBI release date
2024-11-25
NCBI update date
2024-11-25
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
1
A
C
3
G
T
68
C
G
513
T
G
579
A
C
583
T
G
599
A
G
649
A
G
1028
A
G
1059
A
G
1385
A
G
1732
A
G
1768
A
T
1846
C
C
2074
T
C
2198
T
C
2554
T
C
2691
T
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Deletions
4586
Insertions
ins_15092:ATAT, ins_0:AA
Amino acid mutations
Substitutions
F
F:
F
12
I
F:
K
87
R
F:
S
190
N
F:
R
209
Q
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
A
116
T
G:
I
118
T
G:
T
131
A
G:
I
137
T
G:
T
198
I
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
T
254
I
G:
I
268
T
G:
A
269
V
G:
T
273
I
G:
S
275
P
G:
Y
285
H
L
L:
S
169
P
L:
K
570
R
L:
I
824
M
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
NS2
NS2:
D
6
N
Deletions
None
Insertions
None
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