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Influenza A/H5N1
RSV-A
RSV B
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GS_001E08P.1
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Display Name: GS_001E08P.1/2024-07-16
Acuna,
D.; Irazoqui,
M.; Palau,
M. J.; Vera,
A.; Vescina,
C. M.; Trevino,
N. P.; Eguiguren,
M. P.; Fernandez Gago,
G.; Alancay,
A.; Nadalich,
V.; Angeletti,
A.; Cordero,
A.; Viegas,
M.
Submission details
Submission ID
PQ600475.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-26 17:57:01 UTC
Date released
2024-11-26 17:57:27 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-26 17:57
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
CONICET (National Council for Scientific and Technical Research), Exacts Sciences School, National University of la Plata
Alignment states and QC metrics
Completeness
99.95%
Length
15217
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
113
Total unknown nucs
0
Sample details
Collection country
Argentina
Collection subdivision level 1
Buenos Aires, La Plata
Collection date
2024-07-16
Isolate name
HRSV/B/Argentina/PAIS-HSML/42/2024-07-16
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ600475.1
NCBI release date
2024-11-25
NCBI update date
2024-11-25
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
458
C
G
513
T
G
579
A
T
670
C
C
772
A
G
1385
A
G
1732
A
G
1768
A
A
1864
G
C
1927
T
C
2074
T
C
2198
T
C
2554
T
C
2691
T
A
2925
T
G
3036
C
A
3060
G
C
3067
T
Show more
Deletions
973
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
F
12
I
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
S
169
P
L:
C
195
Y
L:
K
570
R
L:
S
1239
N
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
Deletions
None
Insertions
None
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