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Influenza A/H5N1
Influenza A/H5N1
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GS_001DY7V.1
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Display Name: GS_001DY7V.1/2024-10-18
Roychoudhury,
P.; Xie,
H.; Ellis,
S. E.; Dang,
T.; Murray,
T.; Hiatt,
B.; Black,
A.; Greninger,
A.
Submission details
Submission ID
PQ585630.1.seg1/PQ585631.1.seg2/PQ585629.1.seg3/PQ585632.1.seg4/PQ585628.1.seg5/PQ585627.1.seg6/PQ585633.1.seg7/PQ585634.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:25
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University of Washington, Laboratory Medicine and Pathology
Clade
Clade
2.3.4.4b
Alignment states and QC metrics seg1
Completeness seg1
98.21%
Length seg1
2316
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
364
Total unknown nucs seg1
17
Alignment states and QC metrics seg2
Completeness seg2
97.01%
Length seg2
2321
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
207
Total unknown nucs seg2
50
Alignment states and QC metrics seg3
Completeness seg3
98.88%
Length seg3
2208
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
235
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
100.00%
Length seg4
1757
Total ambiguous nucs seg4
0
Total deleted nucs seg4
3
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
176
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
99.49%
Length seg5
1557
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
173
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
98.22%
Length seg6
1432
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
212
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
57
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
96.88%
Length seg8
838
Total ambiguous nucs seg8
0
Total deleted nucs seg8
5
Total frame shifts seg8
0
Total inserted nucs seg8
5
Total SNPs seg8
237
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18
Isolate name
UW32495
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg1
PQ585630.1
INSDC accession seg2
PQ585631.1
INSDC accession seg3
PQ585629.1
INSDC accession seg4
PQ585632.1
INSDC accession seg5
PQ585628.1
INSDC accession seg6
PQ585627.1
INSDC accession seg7
PQ585633.1
INSDC accession seg8
PQ585634.1
NCBI release date
2024-11-13
Nucleotide mutations
Substitutions
seg1
seg1:
T
17
A
seg1:
A
33
G
seg1:
A
48
G
seg1:
G
63
A
seg1:
C
69
T
seg1:
A
90
C
seg1:
G
102
T
seg1:
T
105
C
seg1:
T
108
C
seg1:
A
126
G
seg1:
A
141
G
seg1:
G
147
A
seg1:
T
159
A
seg1:
A
165
G
seg1:
T
192
C
seg1:
T
228
C
seg1:
G
243
A
seg1:
G
255
C
Show more
seg2
seg2:
A
70
G
seg2:
T
75
C
seg2:
T
96
C
seg2:
T
108
A
seg2:
A
129
G
seg2:
C
141
A
seg2:
T
171
C
seg2:
A
177
G
seg2:
G
183
A
seg2:
G
195
A
seg2:
G
204
A
seg2:
T
207
C
seg2:
C
216
T
seg2:
T
225
C
seg2:
G
228
A
seg2:
A
237
G
seg2:
T
252
C
seg2:
T
255
C
Show more
seg3
seg3:
T
63
C
seg3:
G
120
T
seg3:
A
126
G
seg3:
T
129
C
seg3:
C
132
T
seg3:
G
144
T
seg3:
C
147
T
seg3:
A
150
G
seg3:
A
171
G
seg3:
C
180
T
seg3:
T
183
C
seg3:
C
206
T
seg3:
A
211
G
seg3:
A
213
G
seg3:
C
228
A
seg3:
T
235
C
seg3:
T
238
C
seg3:
A
243
G
Show more
seg4
seg4:
A
9
T
seg4:
T
10
C
seg4:
A
12
C
seg4:
G
27
A
seg4:
A
30
C
seg4:
G
36
A
seg4:
G
52
A
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
C
102
T
seg4:
A
123
G
seg4:
T
141
C
seg4:
T
144
C
seg4:
G
174
A
seg4:
A
175
G
seg4:
T
183
C
seg4:
C
195
T
Show more
seg5
seg5:
A
40
C
seg5:
G
57
A
seg5:
T
72
C
seg5:
G
81
A
seg5:
A
96
G
seg5:
T
111
C
seg5:
G
117
A
seg5:
T
147
C
seg5:
T
153
C
seg5:
G
159
A
seg5:
T
162
C
seg5:
T
165
C
seg5:
A
183
G
seg5:
C
195
T
seg5:
C
198
T
seg5:
T
201
C
seg5:
A
207
G
seg5:
T
216
C
Show more
seg6
seg6:
A
15
T
seg6:
T
17
C
seg6:
G
35
A
seg6:
C
47
T
seg6:
T
50
C
seg6:
A
53
G
seg6:
T
62
C
seg6:
G
69
A
seg6:
G
74
A
seg6:
T
80
A
seg6:
C
83
T
seg6:
T
84
C
seg6:
A
87
G
seg6:
T
90
C
seg6:
G
101
A
seg6:
C
122
T
seg6:
G
137
A
seg6:
A
140
T
Show more
seg7
seg7:
A
25
G
seg7:
A
76
G
seg7:
C
142
T
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
seg7:
A
322
G
seg7:
A
327
G
seg7:
G
331
A
seg7:
C
332
T
seg7:
A
337
G
Show more
seg8
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
seg8:
G
74
A
Show more
Deletions
seg4:1054-1056, seg8:90, seg8:93, seg8:226-228
Insertions
ins_seg8:221:G, ins_seg8:231:AT, ins_seg8:79:TG
Amino acid mutations
Substitutions
HA
HA:
K
3
N
HA:
V
11
I
HA:
T
52
A
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
H
154
Q
HA:
R
156
A
Show more
M2
M2:
E
14
G
M2:
K
18
N
M2:
V
28
I
M2:
I
51
V
NA
NA:
V
17
I
NA:
M
23
V
NA:
H
44
N
NA:
Q
45
H
NA:
A
46
P
NA:
P
48
T
NA:
I
53
V
NA:
V
67
I
NA:
F
74
L
NA:
L
75
I
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
D
NA:
S
82
P
NA:
T
84
A
NA:
V
99
I
NA:
H
100
Y
NA:
H
155
Y
Show more
NP
NP:
V
105
M
NP:
M
136
L
NP:
A
353
V
NP:
S
450
N
NP:
S
451
A
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
E
36
K
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
E
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
PAX
PAX:
T
61
I
PAX:
I
63
V
PAX:
T
129
I
PAX:
R
195
K
PAX:
G
209
E
PAX:
L
210
P
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
P
PB1
PB1:
N
16
D
PB1:
K
134
N
PB1:
G
154
S
PB1:
E
172
D
PB1:
G
177
E
PB1:
I
182
T
PB1:
S
375
N
PB1:
E
390
G
PB1:
R
430
K
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
I
568
L
PB1:
P
598
L
PB1:
A
609
V
Show more
PB2
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
A
471
T
PB2:
V
478
I
PB2:
Q
508
R
PB2:
S
579
P
PB2:
S
590
G
PB2:
P
628
Q
PB2:
R
699
K
PB2:
M
727
G
PB2:
F
741
S
Deletions
HA:344
Insertions
None
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