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Influenza A/H5N1
Influenza A/H5N1
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GS_001DY6X.1
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Display Name: GS_001DY6X.1/2024-10-18
Roychoudhury,
P.; Xie,
H.; Ellis,
S. E.; Dang,
T.; Murray,
T.; Hiatt,
B.; Black,
A.; Greninger,
A.
Submission details
Submission ID
PQ585624.1.seg5/PQ585625.1.seg7/PQ585626.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:25
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University of Washington, Laboratory Medicine and Pathology
Alignment states and QC metrics seg5
Completeness seg5
99.49%
Length seg5
1557
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
173
Total unknown nucs seg5
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
57
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
96.88%
Length seg8
838
Total ambiguous nucs seg8
0
Total deleted nucs seg8
5
Total frame shifts seg8
0
Total inserted nucs seg8
5
Total SNPs seg8
237
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18
Isolate name
UW56071
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg5
PQ585624.1
INSDC accession seg7
PQ585625.1
INSDC accession seg8
PQ585626.1
NCBI release date
2024-11-13
Nucleotide mutations
Substitutions
seg5
seg5:
A
40
C
seg5:
G
57
A
seg5:
T
72
C
seg5:
G
81
A
seg5:
A
96
G
seg5:
T
111
C
seg5:
G
117
A
seg5:
T
147
C
seg5:
T
153
C
seg5:
G
159
A
seg5:
T
162
C
seg5:
T
165
C
seg5:
A
183
G
seg5:
C
195
T
seg5:
C
198
T
seg5:
T
201
C
seg5:
A
207
G
seg5:
T
216
C
Show more
seg7
seg7:
A
25
G
seg7:
A
76
G
seg7:
C
142
T
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
C
274
T
seg7:
T
275
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
seg7:
T
316
C
seg7:
G
319
A
seg7:
A
322
G
seg7:
A
327
G
seg7:
G
331
A
seg7:
C
332
T
seg7:
A
337
G
Show more
seg8
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
seg8:
G
74
A
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Deletions
seg8:90, seg8:93, seg8:226-228
Insertions
ins_seg8:221:G, ins_seg8:231:AT, ins_seg8:79:TG
Amino acid mutations
Substitutions
M2
M2:
E
14
G
M2:
K
18
N
M2:
V
28
I
M2:
I
51
V
NP
NP:
V
105
M
NP:
M
136
L
NP:
A
353
V
NP:
S
450
N
NP:
S
451
A
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
E
36
K
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
E
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
Deletions
None
Insertions
None
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