GenSpectrum
Influenza A/H5N1
Influenza A/H5N1
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_001DY17.1
Download
Download FASTA
Download metadata TSV
Display Name: GS_001DY17.1/2024-10-18
Kirby,
M. K.; Steel,
J.; Garten,
R.; Davis,
T.; Dugan,
V.; DaSilva,
J.; Liddell,
J.; Frederick,
J. C.; Di,
H.; Sheffield,
S.; Radford,
K.; De La Cruz,
J.; Keong,
L.; Jang,
Y.; Shu,
B.; Schatzman,
S.; Nguyen,
H.; Murray,
T.; Dang,
T.; Hiatt,
B.
Submission details
Submission ID
PQ573565.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:25
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
INSDC
Bioproject accession
PRJNA1095491
INSDC accession seg8
PQ573565.1
NCBI release date
2024-11-08
Alignment states and QC metrics seg8
Completeness seg8
100.00%
Length seg8
865
Total ambiguous nucs seg8
0
Total deleted nucs seg8
5
Total frame shifts seg8
0
Total inserted nucs seg8
5
Total SNPs seg8
240
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Substitutions
seg8
seg8:
G
9
A
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
C
65
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
Show more
Deletions
seg8:90, seg8:93, seg8:226-228
Insertions
ins_seg8:221:G, ins_seg8:231:AT, ins_seg8:79:TG
Amino acid mutations
Substitutions
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
E
36
K
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
E
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
Deletions
None
Insertions
None
Load sequences