GS_001DXYD.1

Display Name: GS_001DXYD.1/2024-10-18
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; DaSilva, J.; Liddell, J.; Frederick, J. C.; Di, H.; Sheffield, S.; Radford, K.; De La Cruz, J.; Keong, L.; Jang, Y.; Shu, B.; Schatzman, S.; Nguyen, H.; Murray, T.; Dang, T.; Hiatt, B.

Submission details

Submission ID
PQ573562.1.seg4
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:25insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg4
PQ573562.1
NCBI release date
2024-11-08

Clade

Clade
2.3.4.4b

Alignment states and QC metrics seg4

Completeness seg4
99.66%
Length seg4
1751
Total ambiguous nucs seg4
0
Total deleted nucs seg4
3
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
176
Total unknown nucs seg4
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

seg4

  • seg4:A9T
  • seg4:T10C
  • seg4:A12C
  • seg4:G27A
  • seg4:A30C
  • seg4:G36A
  • seg4:G52A
  • seg4:C54T
  • seg4:T57C
  • seg4:C63T
  • seg4:C102T
  • seg4:A123G
  • seg4:T141C
  • seg4:T144C
  • seg4:G174A
  • seg4:A175G
  • seg4:T183C
  • seg4:C195T
    • Deletions
    seg4:1054-1056
    Insertions
    None

    Amino acid mutations

    Substitutions

    HA

  • HA:K3N
  • HA:V11I
  • HA:T52A
  • HA:R69K
  • HA:N88R
  • HA:K98R
  • HA:S100N
  • HA:D110S
  • HA:F111L
  • HA:T124I
  • HA:Q131L
  • HA:S139P
  • HA:D142E
  • HA:A143T
  • HA:S145L
  • HA:S149A
  • HA:H154Q
  • HA:R156A
    • Deletions
    HA:344
    Insertions
    None