GS_001DXXF.1

Display Name: GS_001DXXF.1/2024-10-18
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; DaSilva, J.; Liddell, J.; Frederick, J. C.; Di, H.; Sheffield, S.; Radford, K.; De La Cruz, J.; Keong, L.; Jang, Y.; Shu, B.; Schatzman, S.; Nguyen, H.; Murray, T.; Dang, T.; Hiatt, B.

Submission details

Submission ID
PQ573561.1.seg1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:25insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg1
PQ573561.1
NCBI release date
2024-11-08

Alignment states and QC metrics seg1

Completeness seg1
98.93%
Length seg1
2316
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
365
Total unknown nucs seg1
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

seg1

  • seg1:T17A
  • seg1:A33G
  • seg1:A48G
  • seg1:G63A
  • seg1:C69T
  • seg1:A90C
  • seg1:G102T
  • seg1:T105C
  • seg1:T108C
  • seg1:A126G
  • seg1:A141G
  • seg1:G147A
  • seg1:T159A
  • seg1:A165G
  • seg1:T192C
  • seg1:A211C
  • seg1:G222A
  • seg1:T228C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    PB2

  • PB2:N334S
  • PB2:K340R
  • PB2:K355R
  • PB2:A471T
  • PB2:V478I
  • PB2:Q508R
  • PB2:S579P
  • PB2:S590G
  • PB2:P628Q
  • PB2:R699K
  • PB2:M727G
  • PB2:F741S
    • Deletions
    None
    Insertions
    None