GS_001DXSR.1

Display Name: GS_001DXSR.1/2024-10-18
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; DaSilva, J.; Liddell, J.; Frederick, J. C.; Di, H.; Sheffield, S.; Radford, K.; De La Cruz, J.; Keong, L.; Jang, Y.; Shu, B.; Schatzman, S.; Nguyen, H.; Murray, T.; Dang, T.; Hiatt, B.

Submission details

Submission ID
PQ573556.1.seg5
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:25insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg5
PQ573556.1
NCBI release date
2024-11-08

Alignment states and QC metrics seg5

Completeness seg5
98.40%
Length seg5
1540
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
173
Total unknown nucs seg5
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

seg5

  • seg5:A40C
  • seg5:G57A
  • seg5:T72C
  • seg5:G81A
  • seg5:A96G
  • seg5:T111C
  • seg5:G117A
  • seg5:T147C
  • seg5:T153C
  • seg5:G159A
  • seg5:T162C
  • seg5:T165C
  • seg5:A183G
  • seg5:C195T
  • seg5:C198T
  • seg5:T201C
  • seg5:A207G
  • seg5:T216C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:V105M
  • NP:M136L
  • NP:A353V
  • NP:S450N
  • NP:S451A
    • Deletions
    None
    Insertions
    None