GS_001DXRT.1

Display Name: GS_001DXRT.1/2024-10-18
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; DaSilva, J.; Liddell, J.; Frederick, J. C.; Di, H.; Sheffield, S.; Radford, K.; De La Cruz, J.; Keong, L.; Jang, Y.; Shu, B.; Schatzman, S.; Nguyen, H.; Murray, T.; Dang, T.; Hiatt, B.

Submission details

Submission ID
PQ573555.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:24:26 UTC
Date released
2024-11-21 13:56:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:25insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg6
PQ573555.1
NCBI release date
2024-11-08

Alignment states and QC metrics seg6

Completeness seg6
98.29%
Length seg6
1433
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
212
Total unknown nucs seg6
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

seg6

  • seg6:A15T
  • seg6:T17C
  • seg6:G35A
  • seg6:C47T
  • seg6:T50C
  • seg6:A53G
  • seg6:T62C
  • seg6:G69A
  • seg6:G74A
  • seg6:T80A
  • seg6:C83T
  • seg6:T84C
  • seg6:A87G
  • seg6:T90C
  • seg6:G101A
  • seg6:C122T
  • seg6:G137A
  • seg6:A140T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NA

  • NA:V17I
  • NA:M23V
  • NA:H44N
  • NA:Q45H
  • NA:A46P
  • NA:P48T
  • NA:I53V
  • NA:V67I
  • NA:F74L
  • NA:L75I
  • NA:T76A
  • NA:K78Q
  • NA:A81D
  • NA:S82P
  • NA:T84A
  • NA:V99I
  • NA:H100Y
  • NA:H155Y
    • Deletions
    None
    Insertions
    None