GS_000XQTU.1

Display Name: USA/GS_000XQTU.1/2016-01-01
A. O. Musa, S. R. Faber & C. B. Lopez

Submission details

Submission ID
PP525316.1
Submitting group
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:17:01 UTC

Authors

Author affiliations
Washington University in St. Louis, Molecular Microbiology

Alignment states and QC metrics

Completeness
99.03%
Length
15077
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
158
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
Philadelphia, PA
Collection date
2016-01-01
Isolate name
b65

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-03-31
NCBI update date
2024-03-31

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • A13C
  • A14T
  • G16C
  • G17C
  • G19A
  • C20T
  • A21C
  • A22T
  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • T249A
  • C411T
  • C528T
  • G551A
  • G664A
    • Deletions
    4592
    Insertions
    ins_2297:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:T4I
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:I134K
  • G:L142S
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M43I

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None