GS_000XQP2.1

Display Name: USA/GS_000XQP2.1/2016-01-01
Musa, A. O.; Faber, S. R.; Lopez, C. B.

Submission details

Submission ID
PP525312.1
Submitting group
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:17:01 UTC

Authors

Author affiliations
Washington University in St. Louis, Molecular Microbiology

Alignment states and QC metrics

Completeness
98.96%
Length
15070
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
5
Total SNPs
104
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
Philadelphia, PA
Collection date
2016-01-01
Isolate name
b36

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-03-31
NCBI update date
2024-03-31

Clade & Lineage

Lineage
A.D.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • A23T
  • A25C
  • A26C
  • T66A
  • A67G
  • C1012T
  • G1050A
  • A1078G
  • T1359C
  • T1761C
  • C1788T
  • C1806T
  • T2165C
  • C2368T
  • A2392G
  • T2481C
  • A2695G
  • T3109C
    • Deletions
    4174, 15053
    Insertions
    ins_28:TCT, ins_7586:AA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:K327N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T130K
  • G:G224E
  • G:S243I
  • G:I265L
  • G:P274L
  • G:D284G
  • G:P298L
  • G:V303I

    • L

  • L:P171L
  • L:R256K
  • L:L1438Q
  • L:S1593N
  • L:N1723S
  • L:G1731D

    • M

  • M:M254I

    • N

  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:N63S
    • Deletions
    None
    Insertions
    None