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Influenza A/H5N1
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GS_000XQP2.1
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Display Name: GS_000XQP2.1/2024-06-04
Rothstein,
A. P.; Qiu,
X.; Collins,
S.; Muir,
G.; Simas,
A.; Sum,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Phillipson,
C. W.; Plocik,
A.; Simen,
B.
Submission details
Submission ID
PQ117646.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Alignment states and QC metrics
Completeness
99.91%
Length
15211
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
213
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2024-06-04
Isolate name
GKISBBBB37986
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ117646.1
NCBI release date
2024-08-07
NCBI update date
2024-08-07
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
G
198
A
A
399
G
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
C
850
T
G
1000
A
C
1012
T
T
1035
A
T
1048
C
G
1050
A
T
1359
C
Show more
Deletions
4175, 4592
Insertions
ins_3213:A
Amino acid mutations
Substitutions
F
F:
L
119
H
F:
A
518
V
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
L
142
S
G:
G
224
E
G:
V
225
A
G:
T
231
A
G:
S
243
I
G:
E
257
K
G:
K
262
E
G:
I
265
L
G:
P
276
L
G:
D
284
G
G:
E
295
V
G:
Y
304
H
G:
L
314
P
G:
T
320
A
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
K
182
R
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
C
1733
Y
L:
G
1735
S
L:
S
1789
F
L:
Y
2163
N
M
M:
K
25
R
M:
M
43
I
N
N:
V
352
A
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
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