GS_000XQ8Z.1

Display Name: GS_000XQ8Z.1/2024-02-25
Frazar, C. D.; Lee, J.; Ryke, E.; Gamboa, L.; Stone, J.; McDermot, E.; Kolar, T.; Han, P. D.; Sibley, T. R.; Reinhart, D.; Grindstaff, S.; Truong, M.; Babu, T. M.; Feldstein, L. R.; Saydah, S.; Briggs-Hagen, M.; Casto, A.; Ehmen, B.; Englund, J. A.; Fortmann, S. P.; Kuntz, J. L.; Lockwood, T.; Midgley, C. M.; Mularski, ..., A. L.

Submission details

Submission ID
PQ008875.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Seattle Flu Study, The Brotman Baty Institute for Precision Medicine

INSDC

Bioproject accession
PRJNA988152
Biosample accession
SAMN42435903
INSDC accession
PQ008875.1
NCBI release date
2024-07-20
NCBI update date
2024-07-20

Alignment states and QC metrics

Completeness
98.44%
Length
15147
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
217
Total unknown nucs
161

Sample details

Collection country
USA
Collection subdivision level 1
Oregon,Multnomah County
Collection date
2024-02-25
Isolate name
RSV-A/human/USA/OR-S25505/2024

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.3

Nucleotide mutations

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • A201G
  • T463C
  • C480T
  • G664A
  • C769T
  • C871T
  • T886C
  • A940C
  • A1009G
  • C1012T
  • G1050A
  • C1173T
  • T1320C
  • T1359C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:L15F
  • F:T100S
  • F:T122A

    • G

  • G:L35I
  • G:P71L
  • G:A79V
  • G:H90Y
  • G:L101F
  • G:S128F
  • G:I134K
  • G:I141M
  • G:P206Q
  • G:T220A
  • G:K223R
  • G:G224E
  • G:S243I
  • G:K262E
  • G:E263A
  • G:P276Q
  • G:T292I

    • L

  • L:P171L
  • L:T179A
  • L:R256K
  • L:V335I
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:V1943D

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None