GS_000XQ71.1

Display Name: GS_000XQ71.1/2024-03-05
Frazar, C. D.; Lee, J.; Ryke, E.; Gamboa, L.; Stone, J.; McDermot, E.; Kolar, T.; Han, P. D.; Sibley, T. R.; Reinhart, D.; Grindstaff, S.; Truong, M.; Babu, T. M.; Feldstein, L. R.; Saydah, S.; Briggs-Hagen, M.; Casto, A.; Ehmen, B.; Englund, J. A.; Fortmann, S. P.; Kuntz, J. L.; Lockwood, T.; Midgley, C. M.; Mularski, ..., A. L.

Submission details

Submission ID
PQ008874.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Seattle Flu Study, The Brotman Baty Institute for Precision Medicine

INSDC

Bioproject accession
PRJNA988152
Biosample accession
SAMN42435902
INSDC accession
PQ008874.1
NCBI release date
2024-07-20
NCBI update date
2024-07-20

Alignment states and QC metrics

Completeness
99.17%
Length
15129
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
216
Total unknown nucs
35

Sample details

Collection country
USA
Collection subdivision level 1
Washington,King County
Collection date
2024-03-05
Isolate name
RSV-A/human/USA/WA-S25504/2024

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • T246C
  • C598T
  • T697C
  • A940C
  • A970G
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1078G
  • G1248A
  • T1254C
    • Deletions
    4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:A103T
  • F:T122A
  • F:T324I
  • F:A518T

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:D214N
  • G:G224E
  • G:T235I
  • G:N242T
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:A1927S
  • L:V1943D

    • M

  • M:M73L

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None