GS_000XQ71.1

Display Name: USA/GS_000XQ71.1/2015-01-01
A. O. Musa, S. R. Faber & C. B. Lopez

Submission details

Submission ID
PP525296.1
Submitting group
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:17:01 UTC

Authors

Author affiliations
Washington University in St. Louis, Molecular Microbiology

Alignment states and QC metrics

Completeness
99.11%
Length
15090
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
116
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
Philadelphia, PA
Collection date
2015-01-01
Isolate name
b2

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-03-31
NCBI update date
2024-03-31

Clade & Lineage

Lineage
A.D

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T66A
  • A67G
  • C183T
  • C589T
  • A772G
  • C1012T
  • A1024C
  • G1050A
  • T1359C
  • T1450C
  • C1788T
  • C1806T
  • T1815C
  • T2073C
  • A2079C
  • T2165C
  • A2392G
  • T2481C
    • Deletions
    None
    Insertions
    ins_0:C

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:A103T

    • G

  • G:T42I
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:P274L
  • G:D284G
  • G:P298L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:I1114V
  • L:L1438Q
  • L:N1723S
  • L:G1731D

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None