GS_000XQ39.1

Display Name: GS_000XQ39.1/2024-04-01
Bonificio, B.; Schnurr, V.; Russel, A.; Griesemer, S.; Lamson, D. M.; St. George, K.

Submission details

Submission ID
PP997255.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
David Axelrod Institute, Virology

Alignment states and QC metrics

Completeness
18.19%
Length
2770
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
50
Total unknown nucs
0

Sample details

Collection country
USA
Collection date
2024-04-01

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP997255.1
NCBI release date
2024-07-15
NCBI update date
2024-07-15

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • C4673T
  • C4718T
  • A4720G
  • C4821T
  • C4842T
  • C4863T
  • C4919T
  • C4952T
  • G5020A
  • T5052A
  • C5203T
  • C5268A
  • A5277G
  • G5322A
  • G5345A
  • C5355T
  • T5368C
  • C5374A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:A103T
  • F:T122A
  • F:S362L
  • F:R553K

    • G

  • G:R8C
  • G:A57V
  • G:S64L
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:G232R
  • G:T235I
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
    • Deletions
    None
    Insertions
    None