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RSV-A
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
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GS_000XQ39.1
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Display Name: Peru/GS_000XQ39.1/2023-04-21
Meza,
E.; Cuicapuza,
D.; Martinez-Ventura,
A.; Ayzanoa,
B.; Zamudio,
C.; Avendano,
C.; Greninger,
A.; Sobolik,
E.; Tsukayama,
P.
Submission details
Submission ID
PP508184.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:17:01 UTC
Authors
Author affiliations
Universidad Peruana Cayetano Heredia, Ciencias Celulares y Moleculares
Alignment states and QC metrics
Completeness
99.69%
Length
15174
Total ambiguous nucs
0
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
1
Total SNPs
221
Total unknown nucs
0
Sample details
Collection country
Peru
Collection date
2023-04-21
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP508184.1
NCBI release date
2024-03-27
NCBI update date
2024-03-27
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
A
158
G
C
183
T
T
246
C
T
468
C
C
522
A
A
595
G
T
697
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
G
1050
A
A
1051
C
A
1078
G
Show more
Deletions
3190, 4592, 7516-7518
Insertions
ins_3179:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
I
75
N
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
R
151
H
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
P
230
L
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
T
282
I
G:
D
284
G
G:
V
303
A
Show more
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
T
1728
S
L:
G
1731
D
L:
M
1757
I
L:
V
1943
D
M
M:
M
73
L
N
N:
V
352
A
NS1
NS1:
Y
30
C
P
P:
V
43
I
P:
L
55
P
P:
T
69
I
P:
T
72
A
Deletions
None
Insertions
None
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