GS_000XQ2B.1

Display Name: GS_000XQ2B.1/2024-03-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP978538.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN42232794
INSDC accession
PP978538.1
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession
SRR29680351

Alignment states and QC metrics

Completeness
93.81%
Length
15045
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
1
Total SNPs
211
Total unknown nucs
764

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-12
Isolate name
MN-MDH-RSVA-00927

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.1

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • T195C
  • G587T
  • T659C
  • T673C
  • C691T
  • G1034A
  • G1050A
  • G1077A
  • T1312C
  • T1359C
  • G1368A
  • G1383A
  • A1386G
  • T1413A
  • T1422C
  • A1476C
    • Deletions
    3214, 3215, 4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:L20F
  • F:S276N

    • G

  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243T
  • G:S250F
  • G:H258Q
  • G:K262E
  • G:E263K
  • G:I265L
  • G:H266L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1523V
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • N

  • N:E122D
  • N:V352A

    • P

  • P:T92M
    • Deletions
    None
    Insertions
    None