Display Name: GS_000XQ1D.1/2024-03-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP978537.1
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession

Alignment states and QC metrics

Completeness
95.77%
Length
15045
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
217
Total unknown nucs
466

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-12
Isolate name
MN-MDH-RSVA-00926

Host

Host name scientific
Homo sapiens
Host taxon id

Clade & Lineage

Lineage
A.D.1.5

Nucleotide mutations

Substitutions

  • C90T
  • T101C
  • C183T
  • G198A
  • A321G
  • A351G
  • A486G
  • G551A
  • C622T
  • G664A
  • T697C
  • A748G
  • T928C
  • G1000A
  • C1012T
  • T1019C
  • A1031T
  • T1032C
  • Deletions
    4592, 7555
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:V127I
  • F:S377N
  • F:I384V
  • G

  • G:A57T
  • G:P71L
  • G:I76V
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:E286K
  • G:S294P
  • G:Y304H
  • G:T319I
  • G:T320A
  • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:K1467N
  • L:I1653V
  • L:K1661N
  • L:V1721I
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • M

  • M:M43I
  • N

  • N:V352A
  • NS1

  • NS1:V11A
  • P

  • P:L55P
  • Deletions
    None
    Insertions
    None