GS_000XQ1D.1

Display Name: Peru/GS_000XQ1D.1/2022-05-30
E. Meza, D. Cuicapuza, A. Martinez-Ventura, B. Ayzanoa, C. Zamudio, C. Avendano, A. Greninger, E. Sobolik & P. Tsukayama

Submission details

Submission ID
PP508181.1
Submitting group
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:17:01 UTC

Authors

Author affiliations
Universidad Peruana Cayetano Heredia, Ciencias Celulares y Moleculares

Alignment states and QC metrics

Completeness
93.86%
Length
14998
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
178
Total unknown nucs
706

Sample details

Collection country
Peru
Collection date
2022-05-30

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-03-27
NCBI update date
2024-03-27

Clade & Lineage

Lineage
A.D.3.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C156T
  • C183T
  • A280G
  • C511T
  • G587T
  • G590A
  • A682G
  • T1011A
  • C1012T
  • G1034A
  • G1077A
  • G1191A
  • T1359C
  • T1413A
  • T1422C
  • A1518G
  • C1788T
    • Deletions
    None
    Insertions
    ins_3159:N

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I
  • F:S276N

    • G

  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230I
  • G:S243T
  • G:L247P
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:P298L
  • G:Y304H

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1653V
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:S1745L
  • L:I1837V

    • N

  • N:V352A

    • NS1

  • NS1:I71V

    • P

  • P:L55P
  • P:S60P
  • P:T92I
    • Deletions
    None
    Insertions
    None