Display Name: GS_000XPVR.1/2024-03-06
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP978531.1
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession

Alignment states and QC metrics

Completeness
95.28%
Length
15045
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
2
Total SNPs
214
Total unknown nucs
541

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-06
Isolate name
MN-MDH-RSVA-00920

Host

Host name scientific
Homo sapiens
Host taxon id

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • T246C
  • C378T
  • T503C
  • G520A
  • T697C
  • T715C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • G1368A
  • T1380C
  • Deletions
    4592, 7516-7518
    Insertions
    ins_3068:AA

    Amino acid mutations

    Substitutions

    F

  • F:C21S
  • F:A103T
  • F:T122A
  • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:T319I
  • G:T320A
  • L

  • L:P171L
  • L:H237Y
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:M1812I
  • L:V1943D
  • M

  • M:M73L
  • N

  • N:M334I
  • N:V352A
  • P

  • P:L55P
  • P:T69I
  • SH

  • SH:R61Q
  • Deletions
    None
    Insertions
    None