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Influenza A/H5N1
RSV-A
RSV B
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GS_000XPSX.1
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Display Name: GS_000XPSX.1/2024-03-03
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP978528.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN42232784
INSDC accession
PP978528.1
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession
SRR29680362
Alignment states and QC metrics
Completeness
95.99%
Length
15046
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
225
Total unknown nucs
433
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-03
Isolate name
MN-MDH-RSVA-00917
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.4
Nucleotide mutations
Substitutions
C
90
T
C
183
T
T
463
C
G
664
A
T
886
C
A
940
C
A
1009
G
C
1012
T
C
1036
A
G
1050
A
T
1284
C
T
1312
C
T
1320
C
T
1359
C
T
1398
C
A
1500
G
A
1539
G
A
1605
G
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Deletions
4592
Insertions
None
Amino acid mutations
Substitutions
F
F:
L
15
F
F:
T
122
A
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
P
206
Q
G:
T
219
N
G:
G
224
E
G:
T
239
A
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
P
276
Q
G:
D
284
S
G:
S
291
L
G:
E
295
R
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
320
A
L
L:
P
171
L
L:
T
179
A
L:
L
189
I
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
K
1722
E
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
K
1736
E
L:
V
1943
D
L:
I
2087
M
M
M:
K
157
R
N
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
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